From nobody Wed Oct 09 22:23:12 2024 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4XP6pm62hMz5Z3d0; Wed, 09 Oct 2024 22:23:12 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R11" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4XP6pm5PDxz4dYV; Wed, 9 Oct 2024 22:23:12 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1728512592; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=oqzTzravhqZsylxfgCo2w16snogtOwj5fnj/sgNgvnA=; b=FFkMGIUylEX8azxrJzImNojy/0MJmt3JzjtPdiWAxmUV3RF8X86o+v4knAaEDF4LXJ8/V7 sg/iA8eRgp20fCUJWl8A1Yhtxh0nSy/B+ayCyoHOTIlS6+h+bYj0SJEtByCd+r/wnHsjoM g3IeFT926X/W1FIUPY1CLae2EN2R4wJPGpGfet09zJ9Ilx75/DA7tjddTbOK7lOGkMClZz cNN46DTch/QGSCkqFnscY66BMrXPSA4kQ+QCx9L7ELzRFLKtTNzX8GdXBm8SEuyTuN4UKR QWPiWF3UozwyZQiJgAMIjNRiUKwenbeOYfHPUviTTx01pw0xsYNg/rUVUAf5bw== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1728512592; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=oqzTzravhqZsylxfgCo2w16snogtOwj5fnj/sgNgvnA=; b=bZKCSmswvOa4yeRzI8eHPdUYlgfnxp8X0fA1Dt0PyDDpWAFhUbiomsanJl1oiZmlLYvCA8 LkxRGL1M8boz/o/oyqwlLHONtZVhHIda6skoVNHhKCxWBSmawartr4YRVZ4dvuYA0TVpqA 2+arn9KZjYvoz9Lm1ap4c5WN9x5w4h9HxEUTyTJzju45W+XYu28fh67RdkfSWeNVwbvvyq dBBj2YkKsNBaQVXmB1Z40nEq5b2Yha8VHMASDjHVdiqEzWkOrHJSt+cH5lWh53cq3pz0Xn 4CF108fpR3soGULjr2sx7/GISKp7ixlXmM2PW0N9Fu2Ma4yGh+QXeIi6R5cbQw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1728512592; a=rsa-sha256; cv=none; b=IoRStbOaNnDnWQrhshbfLsmF4hrf+RPEWlaid5h8px0Ot27JZIMhMHbulQtzSzYTRTzo2H lVR+zId/ZDsKc2OjzIi6SJxSfkvN//pzw4HkylN7SkP4At/eqbQXuvLNXSGpssctpCwiAv v7KgZmkWXqB3drWa15UCiIYADdOzT7HOkoLSuLLkP7UbWQYqyAVGq7NRL2kpG34kydGUNh cp1Vzye5Ww4+5XjfV6VUaQazqNyyg3PXGGwam2BSl+l/QFOn7ksk4tYETSVX027ZToZY4G vWuVuU2sPWyrShfThWzBLrdrWqgJvVMBxOA03osIOuZeAs23Odt6o62xLPVTeA== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4XP6pm51JfzXMt; Wed, 9 Oct 2024 22:23:12 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.18.1/8.18.1) with ESMTP id 499MNC5O059744; Wed, 9 Oct 2024 22:23:12 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.18.1/8.18.1/Submit) id 499MNCYC059741; Wed, 9 Oct 2024 22:23:12 GMT (envelope-from git) Date: Wed, 9 Oct 2024 22:23:12 GMT Message-Id: <202410092223.499MNCYC059741@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: c9894f60091b - main - biology/samtools: Update to 1.21 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-main@freebsd.org Sender: owner-dev-commits-ports-main@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: c9894f60091b91c81ff7a9e464abc93b166be013 Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=c9894f60091b91c81ff7a9e464abc93b166be013 commit c9894f60091b91c81ff7a9e464abc93b166be013 Author: Jason W. Bacon AuthorDate: 2024-10-09 22:09:44 +0000 Commit: Jason W. Bacon CommitDate: 2024-10-09 22:23:09 +0000 biology/samtools: Update to 1.21 Numerous bug fixes and enhancements since 1.17 Changes: https://github.com/samtools/samtools/releases Reported by: portscout --- biology/samtools/Makefile | 4 ++-- biology/samtools/distinfo | 6 +++--- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile index 85603f8c1cc8..496dfc8af2a1 100644 --- a/biology/samtools/Makefile +++ b/biology/samtools/Makefile @@ -1,6 +1,5 @@ PORTNAME= samtools -DISTVERSION= 1.17 -PORTREVISION= 1 +DISTVERSION= 1.21 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -10,6 +9,7 @@ WWW= https://www.htslib.org/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE +BUILD_DEPENDS= htslib>=1.21:biology/htslib LIB_DEPENDS= libhts.so:biology/htslib TEST_DEPENDS= bash:shells/bash diff --git a/biology/samtools/distinfo b/biology/samtools/distinfo index 55c01a4de639..867f9408bd11 100644 --- a/biology/samtools/distinfo +++ b/biology/samtools/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1677245969 -SHA256 (samtools-samtools-1.17_GH0.tar.gz) = f76ec1880468ecaa5341a7256ae896f2cfb191193dbb683046776fb81e18af49 -SIZE (samtools-samtools-1.17_GH0.tar.gz) = 5459752 +TIMESTAMP = 1727437810 +SHA256 (samtools-samtools-1.21_GH0.tar.gz) = b327b85d3d60771ede370c8bcae0570e7704da39abddfe8e930a85b80aabffac +SIZE (samtools-samtools-1.21_GH0.tar.gz) = 5682709