git: 537eccbc55d0 - main - biology/gatk: Update TEST_ENV

From: Yuri Victorovich <yuri_at_FreeBSD.org>
Date: Fri, 01 Nov 2024 19:29:32 UTC 
The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=537eccbc55d08d5d3bb49806c1e798ccbccc5c61

commit 537eccbc55d08d5d3bb49806c1e798ccbccc5c61
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2024-11-01 19:00:19 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2024-11-01 19:29:28 +0000

    biology/gatk: Update TEST_ENV
---
 biology/gatk/Makefile | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/biology/gatk/Makefile b/biology/gatk/Makefile
index 675650e5ac59..512cb3b71723 100644
--- a/biology/gatk/Makefile
+++ b/biology/gatk/Makefile
@@ -31,7 +31,9 @@ NO_ARCH=	yes
 
 DEPS_CACHE_DIR=	${WRKDIR}
 
-TEST_ENV=	${MAKE_ENV} JAVA_TOOL_OPTIONS="-DLIBBWA_PATH=${PREFIX}/lib/libfml.so"
+TEST_ENV=	${MAKE_ENV} \
+		JAVA_TOOL_OPTIONS="-DLIBBWA_PATH=${PREFIX}/lib/libfml.so" \
+		GATK_LOCAL_JAR=${STAGEDIR}${JAVAJARDIR}/GenomeAnalysisTK-${PORTVERSION}.jar
 
 PLIST_FILES=	bin/${PORTNAME} \
 		${JAVAJARDIR}/GenomeAnalysisTK-${PORTVERSION}.jar