git: c5e70c355be2 - main - biology/py-pyrodigal: update 3.4.0 → 3.4.1

The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=c5e70c355be25f2c803fdebbc8150e68b67e70a9

commit c5e70c355be25f2c803fdebbc8150e68b67e70a9
Author:     Älven <alster@vinterdalen.se>
AuthorDate: 2024-05-26 17:50:11 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2024-05-26 17:51:27 +0000

    biology/py-pyrodigal: update 3.4.0 → 3.4.1
    
    PR:     279310
---
 biology/py-pyrodigal/Makefile  |  4 ++--
 biology/py-pyrodigal/distinfo  |  6 +++---
 biology/py-pyrodigal/pkg-descr | 26 +++++++++++++-------------
 3 files changed, 18 insertions(+), 18 deletions(-)

diff --git a/biology/py-pyrodigal/Makefile b/biology/py-pyrodigal/Makefile
index 67eb9672b9b0..7d135a8b0e3a 100644
--- a/biology/py-pyrodigal/Makefile
+++ b/biology/py-pyrodigal/Makefile
@@ -1,12 +1,12 @@
 PORTNAME=	pyrodigal
-DISTVERSION=	3.4.0
+DISTVERSION=	3.4.1
 CATEGORIES=	biology python
 MASTER_SITES=	PYPI
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Python binding for Prodigal, an ORF finder for genomes and metagenomes
-WWW=		https://github.com/althonos/pyrodigal
+WWW=		https://github.com/althonos/pyrodigal/
 
 LICENSE=	GPLv3
 LICENSE_FILE=	${WRKSRC}/COPYING
diff --git a/biology/py-pyrodigal/distinfo b/biology/py-pyrodigal/distinfo
index d3d07b0b3354..ce200fb3c956 100644
--- a/biology/py-pyrodigal/distinfo
+++ b/biology/py-pyrodigal/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1716179060
-SHA256 (pyrodigal-3.4.0.tar.gz) = d4714e8f9208b7768f89bca9f47013e9f18f978e4baf43176a67af9cb26c7c79
-SIZE (pyrodigal-3.4.0.tar.gz) = 2577063
+TIMESTAMP = 1716658828
+SHA256 (pyrodigal-3.4.1.tar.gz) = 65963ad8cf651f408758e7fa74cbf793eae9720310f0ef8781ee1a285d435326
+SIZE (pyrodigal-3.4.1.tar.gz) = 2577599
diff --git a/biology/py-pyrodigal/pkg-descr b/biology/py-pyrodigal/pkg-descr
index c56d5dda28d0..f33eb8de1a50 100644
--- a/biology/py-pyrodigal/pkg-descr
+++ b/biology/py-pyrodigal/pkg-descr
@@ -2,17 +2,17 @@ Pyrodigal is a Python module that provides bindings to Prodigal using Cython.
 
 Features:
 The library now features everything from the original Prodigal CLI:
-* run mode selection: Choose between single mode, using a training sequence to
-  count nucleotide hexamers, or metagenomic mode, using pre-trained data from
-  different organisms (prodigal -p).
-* region masking: Prevent genes from being predicted across regions containing
-  unknown nucleotides (prodigal -m).
-* closed ends: Genes will be identified as running over edges if they are larger
-  than a certain size, but this can be disabled (prodigal -c).
+* run mode selection: Choose between single mode, using a training sequence
+  to count nucleotide hexamers, or metagenomic mode, using pre-trained data
+  from different organisms (prodigal -p).
+* region masking: Prevent genes from being predicted across regions
+  containing unknown nucleotides (prodigal -m).
+* closed ends: Genes will be identified as running over edges if they are
+  larger than a certain size, but this can be disabled (prodigal -c).
 * training configuration: During the training process, a custom translation
-  table can be given (prodigal -g), and the Shine-Dalgarno motif search can be
-  forcefully bypassed (prodigal -n)
-* output files: Output files can be written in a format mostly compatible with
-  the Prodigal binary, including the protein translations in FASTA format
-  (prodigal -a), the gene sequences in FASTA format (prodigal -d), or the
-  potential gene scores in tabular format (prodigal -s).
+  table can be given (prodigal -g), and the Shine-Dalgarno motif search can
+  be forcefully bypassed (prodigal -n)
+* output files: Output files can be written in a format mostly compatible
+  with the Prodigal binary, including the protein translations in FASTA
+  format (prodigal -a), the gene sequences in FASTA format (prodigal -d),
+  or the potential gene scores in tabular format (prodigal -s).