From nobody Sun May 05 14:47:07 2024 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4VXS6z5ppVz5K40j; Sun, 05 May 2024 14:47:07 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4VXS6z2lhgz4kn3; Sun, 5 May 2024 14:47:07 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1714920427; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=87ZaXaazJxPPS4J2Dqdp/goNj3HbC2bMm/JbKsvN+Cg=; b=kRRTYJ7h1ao5wBCVV4PBRBPDbHOrA18LOtyxVze6P6n2sHwb6HmklseBjtCVezU92wkVod uop1lMpajLpNaZm88lY7p5WoHT3FM/BcDOLjQ4+XTpKsMMTGMEXnWlz1BcJchv575h/Fx1 +BJMbfodm2ytu6J/KbRTs9NrRpoOlFFuVLC9gey/GXkGVPnHhAd9qS/NQeDkKQDBtwBKPw T5Tly2mh70LyO6uTVoU1QJx508bjuhf8CBcwWA12csq3xMc0UBsptXMIYqXoKCfbhSRjXZ F1+6ByJPk4lDamnvMY4iJh6j8LXyp87pUw3As8S7p2jFzS7cgHZtZc2mNsyCDA== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1714920427; a=rsa-sha256; cv=none; b=HclayhDVHbVQyzC9Jl01PixsuZ+PARuNoyFGICn2Yd5Kc6AWD1ql6rbYaYKyoiBh/Ikaho +Ur8FcVf6xJ9yV75qNEO8uzTOrLO53t3KsGgEOANu3sdhr49mMsWVjRWyxKKsGcpqQ5q7Z uvYVFcd3mYHbglezUUD9B5NMvM0uMs/10HFVMqqgpsTnCUjuz/f7WeyOiUqoaiuLUSSgy9 agUD9MU0fXaAdI+7yaKtSQcfEcx3gx33xo688Qim69/Cjq41jg5A+Z7A77/GoyIezU+ttK Y/mEQwRLGdL/TuVwea1FmqY1uesigxQuA/lBRDu7QBKjP96RH9IpMeQhhs4v8A== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1714920427; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=87ZaXaazJxPPS4J2Dqdp/goNj3HbC2bMm/JbKsvN+Cg=; b=xLxBTiqX5jO4b9GlqeKoy8tqGru5n+ObL4geSbi5LbNfybWPQO1nFOY/pVHhL/L0No6QrE LGjwsb4KilAa7pS8x/YHNdKo6Tfxzvasd0PYk7IXRbp9FZ//J59F10ABMzmtDSuNx8Omzc vgJe8D0erWTyRwD7k5VOJGMD8KBi0eOJo44O28IQSSzH+JmWT2udSY76WrBisBWrXqLNGz bcL7rGqfaybiSLipw7yoia8IrcK+zqWjij35VWD5VNxAPw7tYvbZn1ioArlTyHZ1mEWopC DpSt5vCFmqabrd54et/yv/b2U3AzO0C7IWwxLxkWpBhgtraggjLeyyedKARScw== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4VXS6z23S1zJ27; Sun, 5 May 2024 14:47:07 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 445El7vx029043; Sun, 5 May 2024 14:47:07 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 445El7wK029040; Sun, 5 May 2024 14:47:07 GMT (envelope-from git) Date: Sun, 5 May 2024 14:47:07 GMT Message-Id: <202405051447.445El7wK029040@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 5d736fc85e42 - main - biology/kallisto: Use EXTRACT_AFTER_ARGS to omit unused htslib dir List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-main@freebsd.org Sender: owner-dev-commits-ports-main@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 5d736fc85e42aac2649de640037dc54382176691 Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=5d736fc85e42aac2649de640037dc54382176691 commit 5d736fc85e42aac2649de640037dc54382176691 Author: Jason W. Bacon AuthorDate: 2024-05-05 14:44:55 +0000 Commit: Jason W. Bacon CommitDate: 2024-05-05 14:47:05 +0000 biology/kallisto: Use EXTRACT_AFTER_ARGS to omit unused htslib dir Reduces I/O during builds PR: 278739 Reported by: diizzy --- biology/kallisto/Makefile | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/biology/kallisto/Makefile b/biology/kallisto/Makefile index 8774208d9097..158ff03a9137 100644 --- a/biology/kallisto/Makefile +++ b/biology/kallisto/Makefile @@ -1,6 +1,7 @@ PORTNAME= kallisto DISTVERSIONPREFIX= v DISTVERSION= 0.50.1 +PORTREVISION= 1 PORTEPOCH= 1 CATEGORIES= biology @@ -22,6 +23,8 @@ USES= cmake:noninja compiler:c++11-lang gmake localbase:ldflags USE_GITHUB= yes GH_ACCOUNT= pachterlab +EXTRACT_AFTER_ARGS= --exclude ${GH_PROJECT_DEFAULT}-${GH_TAGNAME_EXTRACT}/ext/htslib --no-same-owner --no-same-permissions + SUB_FILES= kallisto-test PORTEXAMPLES= * @@ -39,9 +42,6 @@ LDFLAGS+= -lhts -lz OPTIONS_DEFINE= EXAMPLES -post-extract: - ${RM} -rf ${WRKSRC}/ext/htslib - post-install-EXAMPLES-on: ${INSTALL_SCRIPT} ${WRKDIR}/kallisto-test ${STAGEDIR}${PREFIX}/bin cd ${WRKSRC}/test && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}