git: 2248d57ea52e - main - biology/pbseqan: Remove expired port

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From: Rene Ladan <rene_at_FreeBSD.org>
Date: Sun, 05 May 2024 11:35:57 UTC
The branch main has been updated by rene:

URL: https://cgit.FreeBSD.org/ports/commit/?id=2248d57ea52e5abb1f610e245f19b31edea0bdbd

commit 2248d57ea52e5abb1f610e245f19b31edea0bdbd
Author:     Rene Ladan <rene@FreeBSD.org>
AuthorDate: 2024-05-05 11:35:30 +0000
Commit:     Rene Ladan <rene@FreeBSD.org>
CommitDate: 2024-05-05 11:35:44 +0000

    biology/pbseqan: Remove expired port
    
    2024-05-05 biology/pbseqan: Upstream merged into SeqAn project: Use biology/seqan
---
 MOVED                     |   1 +
 biology/Makefile          |   1 -
 biology/pbseqan/Makefile  |  30 ---
 biology/pbseqan/distinfo  |   3 -
 biology/pbseqan/pkg-descr |   9 -
 biology/pbseqan/pkg-plist | 657 ----------------------------------------------
 6 files changed, 1 insertion(+), 700 deletions(-)

diff --git a/MOVED b/MOVED
index 400702abdf82..2ee88ca75019 100644
--- a/MOVED
+++ b/MOVED
@@ -3232,3 +3232,4 @@ lang/gcc48||2024-05-01|Has expired: Unsupported by upstream since 2015. Use GCC
 multimedia/rubygem-paperclip-av-transcoder-rails50||2024-05-04|Has expired: Depends on deprecated port devel/rubygem-paperclip-rails50
 devel/rubygem-paperclip-rails50||2024-05-04|Has expired: Upstream repo archived Jul 13, 2023. Upstream recommends using Rails' own ActiveStorage
 devel/rubygem-paperclip-rails5||2024-05-04|Has expired: Upstream repo archived Jul 13, 2023. Upstream recommends using Rails' own ActiveStorage
+biology/pbseqan|biology/seqan|2024-05-05|Has expired: Upstream merged into SeqAn project: Use biology/seqan
diff --git a/biology/Makefile b/biology/Makefile
index 742a6885b0d2..2a6da67d4b30 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -142,7 +142,6 @@
     SUBDIR += p5-transdecoder
     SUBDIR += paml
     SUBDIR += pbbam
-    SUBDIR += pbseqan
     SUBDIR += peak-classifier
     SUBDIR += pear-merger
     SUBDIR += phrap
diff --git a/biology/pbseqan/Makefile b/biology/pbseqan/Makefile
deleted file mode 100644
index a7d8d6e04759..000000000000
--- a/biology/pbseqan/Makefile
+++ /dev/null
@@ -1,30 +0,0 @@
-PORTNAME=	pbseqan
-DISTVERSION=	g20171011
-CATEGORIES=	biology
-
-# As of March 2018, unanimity is no longer open source.
-# See https://github.com/PacificBiosciences/ccs.
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Pacific Biosciences patched and stripped down SeqAn
-WWW=		https://github.com/PacificBiosciences/seqan
-
-LICENSE=	BSD3CLAUSE
-LICENSE_FILE=	${WRKSRC}/LICENSE
-
-DEPRECATED=	Upstream merged into SeqAn project: Use biology/seqan
-EXPIRATION_DATE=	2024-05-05
-
-USE_GITHUB=	yes
-GH_ACCOUNT=	PacificBiosciences
-GH_PROJECT=	seqan
-GH_TAGNAME=	21d95d737d8decb5cc3693b9065d81e831e7f57d
-
-NO_BUILD=	yes
-NO_ARCH=	yes
-
-do-install:
-	@${MKDIR} ${STAGEDIR}${PREFIX}/include/PacBio
-	cd ${WRKSRC}/include/seqan && \
-		${COPYTREE_SHARE} . ${STAGEDIR}${PREFIX}/include/PacBio/seqan
-
-.include <bsd.port.mk>
diff --git a/biology/pbseqan/distinfo b/biology/pbseqan/distinfo
deleted file mode 100644
index ac3b9e5292f5..000000000000
--- a/biology/pbseqan/distinfo
+++ /dev/null
@@ -1,3 +0,0 @@
-TIMESTAMP = 1550366556
-SHA256 (PacificBiosciences-seqan-g20171011-21d95d737d8decb5cc3693b9065d81e831e7f57d_GH0.tar.gz) = dcdc564c877190089bd691ab4097164266e675217645613426fb1ff44029da8c
-SIZE (PacificBiosciences-seqan-g20171011-21d95d737d8decb5cc3693b9065d81e831e7f57d_GH0.tar.gz) = 1527033
diff --git a/biology/pbseqan/pkg-descr b/biology/pbseqan/pkg-descr
deleted file mode 100644
index 40bf624533db..000000000000
--- a/biology/pbseqan/pkg-descr
+++ /dev/null
@@ -1,9 +0,0 @@
-This is a public fork of the SeqAn Library v2.0.0, stripped down to just the
-header files and with a few custom fixes.
-
-Some of PacBio's tools depend on SeqAn for efficient implementations of some
-common data-structures for sequence analysis (A huge thanks to SeqAn
-development team!). However PacBio only uses a small amount of the SeqAn
-code-base, and in addition requires a few minor fixes that didn't make it in to
-the initial release of SeqAn v2.0.0. Thus to minimize confusion and band-width,
-we will depend on this fork instead of SeqAn proper.
diff --git a/biology/pbseqan/pkg-plist b/biology/pbseqan/pkg-plist
deleted file mode 100644
index a5019b19b101..000000000000
--- a/biology/pbseqan/pkg-plist
+++ /dev/null
@@ -1,657 +0,0 @@
-include/PacBio/seqan/LICENSE
-include/PacBio/seqan/align.h
-include/PacBio/seqan/align/align_base.h
-include/PacBio/seqan/align/align_cols.h
-include/PacBio/seqan/align/align_config.h
-include/PacBio/seqan/align/align_iterator_base.h
-include/PacBio/seqan/align/align_metafunctions.h
-include/PacBio/seqan/align/align_traceback.h
-include/PacBio/seqan/align/alignment_algorithm_tags.h
-include/PacBio/seqan/align/alignment_operations.h
-include/PacBio/seqan/align/dp_algorithm_impl.h
-include/PacBio/seqan/align/dp_band.h
-include/PacBio/seqan/align/dp_cell.h
-include/PacBio/seqan/align/dp_cell_affine.h
-include/PacBio/seqan/align/dp_cell_dynamic.h
-include/PacBio/seqan/align/dp_cell_linear.h
-include/PacBio/seqan/align/dp_context.h
-include/PacBio/seqan/align/dp_formula.h
-include/PacBio/seqan/align/dp_formula_affine.h
-include/PacBio/seqan/align/dp_formula_dynamic.h
-include/PacBio/seqan/align/dp_formula_linear.h
-include/PacBio/seqan/align/dp_matrix.h
-include/PacBio/seqan/align/dp_matrix_navigator.h
-include/PacBio/seqan/align/dp_matrix_navigator_score_matrix.h
-include/PacBio/seqan/align/dp_matrix_navigator_score_matrix_sparse.h
-include/PacBio/seqan/align/dp_matrix_navigator_trace_matrix.h
-include/PacBio/seqan/align/dp_matrix_sparse.h
-include/PacBio/seqan/align/dp_meta_info.h
-include/PacBio/seqan/align/dp_profile.h
-include/PacBio/seqan/align/dp_scout.h
-include/PacBio/seqan/align/dp_setup.h
-include/PacBio/seqan/align/dp_trace_segment.h
-include/PacBio/seqan/align/dp_traceback_adaptor.h
-include/PacBio/seqan/align/dp_traceback_impl.h
-include/PacBio/seqan/align/evaluate_alignment.h
-include/PacBio/seqan/align/fragment.h
-include/PacBio/seqan/align/gap_anchor.h
-include/PacBio/seqan/align/gapped_value_type.h
-include/PacBio/seqan/align/gaps_anchor.h
-include/PacBio/seqan/align/gaps_array.h
-include/PacBio/seqan/align/gaps_base.h
-include/PacBio/seqan/align/gaps_iterator_anchor.h
-include/PacBio/seqan/align/gaps_iterator_array.h
-include/PacBio/seqan/align/gaps_iterator_base.h
-include/PacBio/seqan/align/global_alignment_banded.h
-include/PacBio/seqan/align/global_alignment_hirschberg_impl.h
-include/PacBio/seqan/align/global_alignment_myers_hirschberg_impl.h
-include/PacBio/seqan/align/global_alignment_myers_impl.h
-include/PacBio/seqan/align/global_alignment_specialized.h
-include/PacBio/seqan/align/global_alignment_unbanded.h
-include/PacBio/seqan/align/local_alignment_banded.h
-include/PacBio/seqan/align/local_alignment_banded_waterman_eggert_impl.h
-include/PacBio/seqan/align/local_alignment_enumeration.h
-include/PacBio/seqan/align/local_alignment_enumeration_banded.h
-include/PacBio/seqan/align/local_alignment_enumeration_unbanded.h
-include/PacBio/seqan/align/local_alignment_unbanded.h
-include/PacBio/seqan/align/local_alignment_waterman_eggert_impl.h
-include/PacBio/seqan/align/matrix_base.h
-include/PacBio/seqan/align_extend.h
-include/PacBio/seqan/align_extend/align_extend.h
-include/PacBio/seqan/align_extend/align_extend_base.h
-include/PacBio/seqan/align_extend/dp_scout_xdrop.h
-include/PacBio/seqan/align_profile.h
-include/PacBio/seqan/align_profile/add_to_profile.h
-include/PacBio/seqan/align_profile/score_profile_seq.h
-include/PacBio/seqan/align_split.h
-include/PacBio/seqan/align_split/align_split_interface.h
-include/PacBio/seqan/align_split/dp_scout_split.h
-include/PacBio/seqan/alignment_free.h
-include/PacBio/seqan/alignment_free/af_d2.h
-include/PacBio/seqan/alignment_free/af_d2star.h
-include/PacBio/seqan/alignment_free/af_d2z.h
-include/PacBio/seqan/alignment_free/af_n2.h
-include/PacBio/seqan/alignment_free/alignment_free_base.h
-include/PacBio/seqan/alignment_free/alignment_free_comparison.h
-include/PacBio/seqan/alignment_free/kmer_functions.h
-include/PacBio/seqan/arg_parse.h
-include/PacBio/seqan/arg_parse/arg_parse_argument.h
-include/PacBio/seqan/arg_parse/arg_parse_ctd_support.h
-include/PacBio/seqan/arg_parse/arg_parse_doc.h
-include/PacBio/seqan/arg_parse/arg_parse_exceptions.h
-include/PacBio/seqan/arg_parse/arg_parse_option.h
-include/PacBio/seqan/arg_parse/arg_parse_parse.h
-include/PacBio/seqan/arg_parse/arg_parse_type_support.h
-include/PacBio/seqan/arg_parse/argument_parser.h
-include/PacBio/seqan/arg_parse/tool_doc.h
-include/PacBio/seqan/arg_parse/xml_support.h
-include/PacBio/seqan/bam_io.h
-include/PacBio/seqan/bam_io/bam_alignment_record.h
-include/PacBio/seqan/bam_io/bam_alignment_record_util.h
-include/PacBio/seqan/bam_io/bam_file.h
-include/PacBio/seqan/bam_io/bam_header_record.h
-include/PacBio/seqan/bam_io/bam_index_bai.h
-include/PacBio/seqan/bam_io/bam_io_context.h
-include/PacBio/seqan/bam_io/bam_sam_conversion.h
-include/PacBio/seqan/bam_io/bam_scanner_cache.h
-include/PacBio/seqan/bam_io/bam_tags_dict.h
-include/PacBio/seqan/bam_io/cigar.h
-include/PacBio/seqan/bam_io/read_bam.h
-include/PacBio/seqan/bam_io/read_sam.h
-include/PacBio/seqan/bam_io/write_bam.h
-include/PacBio/seqan/bam_io/write_sam.h
-include/PacBio/seqan/basic.h
-include/PacBio/seqan/basic/aggregate_concept.h
-include/PacBio/seqan/basic/allocator_chunkpool.h
-include/PacBio/seqan/basic/allocator_interface.h
-include/PacBio/seqan/basic/allocator_multipool.h
-include/PacBio/seqan/basic/allocator_simple.h
-include/PacBio/seqan/basic/allocator_singlepool.h
-include/PacBio/seqan/basic/allocator_to_std.h
-include/PacBio/seqan/basic/alphabet_adapt_builtins.h
-include/PacBio/seqan/basic/alphabet_bio.h
-include/PacBio/seqan/basic/alphabet_concept.h
-include/PacBio/seqan/basic/alphabet_math.h
-include/PacBio/seqan/basic/alphabet_profile.h
-include/PacBio/seqan/basic/alphabet_qualities.h
-include/PacBio/seqan/basic/alphabet_residue.h
-include/PacBio/seqan/basic/alphabet_residue_funcs.h
-include/PacBio/seqan/basic/alphabet_residue_tabs.h
-include/PacBio/seqan/basic/alphabet_simple_type.h
-include/PacBio/seqan/basic/alphabet_storage.h
-include/PacBio/seqan/basic/array_construct_destruct.h
-include/PacBio/seqan/basic/basic_aggregate.h
-include/PacBio/seqan/basic/basic_allocator.h
-include/PacBio/seqan/basic/basic_alphabet.h
-include/PacBio/seqan/basic/basic_concept.h
-include/PacBio/seqan/basic/basic_container.h
-include/PacBio/seqan/basic/basic_debug.h
-include/PacBio/seqan/basic/basic_device.h
-include/PacBio/seqan/basic/basic_exception.h
-include/PacBio/seqan/basic/basic_functors.h
-include/PacBio/seqan/basic/basic_fundamental.h
-include/PacBio/seqan/basic/basic_iterator.h
-include/PacBio/seqan/basic/basic_math.h
-include/PacBio/seqan/basic/basic_metaprogramming.h
-include/PacBio/seqan/basic/basic_parallelism.h
-include/PacBio/seqan/basic/basic_proxy.h
-include/PacBio/seqan/basic/basic_simd_vector.h
-include/PacBio/seqan/basic/basic_smart_pointer.h
-include/PacBio/seqan/basic/basic_stream.h
-include/PacBio/seqan/basic/basic_tangle.h
-include/PacBio/seqan/basic/basic_type.h
-include/PacBio/seqan/basic/basic_view.h
-include/PacBio/seqan/basic/boost_preprocessor_subset.h
-include/PacBio/seqan/basic/builtin_functions.h
-include/PacBio/seqan/basic/concept_checking.h
-include/PacBio/seqan/basic/container_concept.h
-include/PacBio/seqan/basic/debug_helper.h
-include/PacBio/seqan/basic/debug_test_system.h
-include/PacBio/seqan/basic/fundamental_chunking.h
-include/PacBio/seqan/basic/fundamental_comparison.h
-include/PacBio/seqan/basic/fundamental_concepts.h
-include/PacBio/seqan/basic/fundamental_conversion.h
-include/PacBio/seqan/basic/fundamental_metafunctions.h
-include/PacBio/seqan/basic/fundamental_tags.h
-include/PacBio/seqan/basic/fundamental_transport.h
-include/PacBio/seqan/basic/holder_base.h
-include/PacBio/seqan/basic/holder_simple.h
-include/PacBio/seqan/basic/holder_tristate.h
-include/PacBio/seqan/basic/hosted_type_interface.h
-include/PacBio/seqan/basic/iterator_adapt_pointer.h
-include/PacBio/seqan/basic/iterator_adapt_std.h
-include/PacBio/seqan/basic/iterator_adaptor.h
-include/PacBio/seqan/basic/iterator_base.h
-include/PacBio/seqan/basic/iterator_concept.h
-include/PacBio/seqan/basic/iterator_counting.h
-include/PacBio/seqan/basic/iterator_interface.h
-include/PacBio/seqan/basic/iterator_position.h
-include/PacBio/seqan/basic/iterator_range.h
-include/PacBio/seqan/basic/macro_deprecated.h
-include/PacBio/seqan/basic/math_functions.h
-include/PacBio/seqan/basic/math_log_space_value.h
-include/PacBio/seqan/basic/metaprogramming_control.h
-include/PacBio/seqan/basic/metaprogramming_enable_if.h
-include/PacBio/seqan/basic/metaprogramming_logic.h
-include/PacBio/seqan/basic/metaprogramming_math.h
-include/PacBio/seqan/basic/metaprogramming_type.h
-include/PacBio/seqan/basic/metaprogramming_type_algebra.h
-include/PacBio/seqan/basic/pair_base.h
-include/PacBio/seqan/basic/pair_bit_compressed.h
-include/PacBio/seqan/basic/pair_packed.h
-include/PacBio/seqan/basic/profiling.h
-include/PacBio/seqan/basic/property_map_concept.h
-include/PacBio/seqan/basic/proxy_base.h
-include/PacBio/seqan/basic/proxy_iterator.h
-include/PacBio/seqan/basic/test_system.h
-include/PacBio/seqan/basic/triple_base.h
-include/PacBio/seqan/basic/triple_packed.h
-include/PacBio/seqan/basic/tuple_base.h
-include/PacBio/seqan/basic/tuple_bit_compressed.h
-include/PacBio/seqan/basic/volatile_ptr.h
-include/PacBio/seqan/bed_io.h
-include/PacBio/seqan/bed_io/bed_file.h
-include/PacBio/seqan/bed_io/bed_record.h
-include/PacBio/seqan/bed_io/read_bed.h
-include/PacBio/seqan/bed_io/write_bed.h
-include/PacBio/seqan/consensus.h
-include/PacBio/seqan/consensus/consensus_aligner.h
-include/PacBio/seqan/consensus/consensus_aligner_interface.h
-include/PacBio/seqan/consensus/consensus_alignment_options.h
-include/PacBio/seqan/consensus/consensus_base.h
-include/PacBio/seqan/consensus/consensus_builder.h
-include/PacBio/seqan/consensus/consensus_library.h
-include/PacBio/seqan/consensus/consensus_realign.h
-include/PacBio/seqan/consensus/consensus_score.h
-include/PacBio/seqan/consensus/overlap_info_computation.h
-include/PacBio/seqan/consensus/overlapper.h
-include/PacBio/seqan/file.h
-include/PacBio/seqan/file/file_base.h
-include/PacBio/seqan/file/file_cstyle.h
-include/PacBio/seqan/file/file_forwards.h
-include/PacBio/seqan/file/file_interface.h
-include/PacBio/seqan/file/file_mapping.h
-include/PacBio/seqan/file/file_page.h
-include/PacBio/seqan/file/string_external.h
-include/PacBio/seqan/file/string_mmap.h
-include/PacBio/seqan/find.h
-include/PacBio/seqan/find/find_abndm.h
-include/PacBio/seqan/find/find_ahocorasick.h
-include/PacBio/seqan/find/find_base.h
-include/PacBio/seqan/find/find_begin.h
-include/PacBio/seqan/find/find_bndm.h
-include/PacBio/seqan/find/find_bom.h
-include/PacBio/seqan/find/find_hamming_simple.h
-include/PacBio/seqan/find/find_horspool.h
-include/PacBio/seqan/find/find_lambda.h
-include/PacBio/seqan/find/find_multi.h
-include/PacBio/seqan/find/find_multiple_bfam.h
-include/PacBio/seqan/find/find_multiple_shiftand.h
-include/PacBio/seqan/find/find_myers_ukkonen.h
-include/PacBio/seqan/find/find_pattern_base.h
-include/PacBio/seqan/find/find_pex.h
-include/PacBio/seqan/find/find_score.h
-include/PacBio/seqan/find/find_set_horspool.h
-include/PacBio/seqan/find/find_shiftand.h
-include/PacBio/seqan/find/find_shiftor.h
-include/PacBio/seqan/find/find_simple.h
-include/PacBio/seqan/find/find_wild_shiftand.h
-include/PacBio/seqan/find/find_wumanber.h
-include/PacBio/seqan/gff_io.h
-include/PacBio/seqan/gff_io/gff_file.h
-include/PacBio/seqan/gff_io/gff_io_base.h
-include/PacBio/seqan/graph_algorithms.h
-include/PacBio/seqan/graph_algorithms/all_pairs_shortest_path.h
-include/PacBio/seqan/graph_algorithms/bellman_ford.h
-include/PacBio/seqan/graph_algorithms/bipartite_matching.h
-include/PacBio/seqan/graph_algorithms/breadth_first_search.h
-include/PacBio/seqan/graph_algorithms/connected_components.h
-include/PacBio/seqan/graph_algorithms/depth_first_search.h
-include/PacBio/seqan/graph_algorithms/dijkstra.h
-include/PacBio/seqan/graph_algorithms/floyd_warshall.h
-include/PacBio/seqan/graph_algorithms/ford_fulkerson.h
-include/PacBio/seqan/graph_algorithms/graph_algorithm_heap_tree.h
-include/PacBio/seqan/graph_algorithms/graph_algorithm_hmm.h
-include/PacBio/seqan/graph_algorithms/graph_algorithm_lis_his.h
-include/PacBio/seqan/graph_algorithms/kruskal.h
-include/PacBio/seqan/graph_algorithms/path_growing.h
-include/PacBio/seqan/graph_algorithms/prim.h
-include/PacBio/seqan/graph_algorithms/single_source_shortest_path.h
-include/PacBio/seqan/graph_algorithms/strongly_connected_compnents.h
-include/PacBio/seqan/graph_algorithms/topological_sort.h
-include/PacBio/seqan/graph_algorithms/transitive_closure.h
-include/PacBio/seqan/graph_algorithms/weakly_connected_components.h
-include/PacBio/seqan/graph_algorithms/weighted_bipartite_matching.h
-include/PacBio/seqan/graph_align.h
-include/PacBio/seqan/graph_align/graph_algorithm_refine_align.h
-include/PacBio/seqan/graph_align/graph_algorithm_refine_aligngraph.h
-include/PacBio/seqan/graph_align/graph_algorithm_refine_annotation.h
-include/PacBio/seqan/graph_align/graph_algorithm_refine_exact.h
-include/PacBio/seqan/graph_align/graph_algorithm_refine_exact_iterative.h
-include/PacBio/seqan/graph_align/graph_algorithm_refine_fragment.h
-include/PacBio/seqan/graph_align/graph_algorithm_refine_inexact.h
-include/PacBio/seqan/graph_align/graph_algorithm_refine_scoring.h
-include/PacBio/seqan/graph_align/graph_impl_align.h
-include/PacBio/seqan/graph_align/graph_impl_align_adapt.h
-include/PacBio/seqan/graph_msa.h
-include/PacBio/seqan/graph_msa/graph_align_tcoffee_base.h
-include/PacBio/seqan/graph_msa/graph_align_tcoffee_distance.h
-include/PacBio/seqan/graph_msa/graph_align_tcoffee_guidetree.h
-include/PacBio/seqan/graph_msa/graph_align_tcoffee_io.h
-include/PacBio/seqan/graph_msa/graph_align_tcoffee_kmer.h
-include/PacBio/seqan/graph_msa/graph_align_tcoffee_library.h
-include/PacBio/seqan/graph_msa/graph_align_tcoffee_msa.h
-include/PacBio/seqan/graph_msa/graph_align_tcoffee_progressive.h
-include/PacBio/seqan/graph_msa/graph_align_tcoffee_refinement.h
-include/PacBio/seqan/graph_types.h
-include/PacBio/seqan/graph_types/graph_base.h
-include/PacBio/seqan/graph_types/graph_drawing.h
-include/PacBio/seqan/graph_types/graph_edgestump.h
-include/PacBio/seqan/graph_types/graph_idmanager.h
-include/PacBio/seqan/graph_types/graph_impl_automaton.h
-include/PacBio/seqan/graph_types/graph_impl_directed.h
-include/PacBio/seqan/graph_types/graph_impl_hmm.h
-include/PacBio/seqan/graph_types/graph_impl_oracle.h
-include/PacBio/seqan/graph_types/graph_impl_tree.h
-include/PacBio/seqan/graph_types/graph_impl_trie.h
-include/PacBio/seqan/graph_types/graph_impl_undirected.h
-include/PacBio/seqan/graph_types/graph_impl_wordgraph.h
-include/PacBio/seqan/graph_types/graph_interface.h
-include/PacBio/seqan/graph_types/graph_iterator.h
-include/PacBio/seqan/graph_types/graph_iterator_adjacency.h
-include/PacBio/seqan/graph_types/graph_iterator_bfs.h
-include/PacBio/seqan/graph_types/graph_iterator_dfs.h
-include/PacBio/seqan/graph_types/graph_iterator_edge.h
-include/PacBio/seqan/graph_types/graph_iterator_outedge.h
-include/PacBio/seqan/graph_types/graph_iterator_vertex.h
-include/PacBio/seqan/graph_types/graph_utility_parsing.h
-include/PacBio/seqan/graph_types/property_map_generic.h
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