git: 9dd66e05593b - main - biology/migrate: Update to 5.0.6

The branch main has been updated by eduardo:

URL: https://cgit.FreeBSD.org/ports/commit/?id=9dd66e05593b3f4033cd382e03808e825cc6bfda

commit 9dd66e05593b3f4033cd382e03808e825cc6bfda
Author:     Nuno Teixeira <eduardo@FreeBSD.org>
AuthorDate: 2024-03-31 21:45:24 +0000
Commit:     Nuno Teixeira <eduardo@FreeBSD.org>
CommitDate: 2024-03-31 21:47:26 +0000

    biology/migrate: Update to 5.0.6
    
    ChangeLog: https://peterbeerli.com/programs/migrate/distribution_4.x/HISTORY
---
 biology/migrate/Makefile | 6 +++++-
 biology/migrate/distinfo | 6 +++---
 2 files changed, 8 insertions(+), 4 deletions(-)

diff --git a/biology/migrate/Makefile b/biology/migrate/Makefile
index c524444a06bf..fc3734ae592f 100644
--- a/biology/migrate/Makefile
+++ b/biology/migrate/Makefile
@@ -1,5 +1,5 @@
 PORTNAME=	migrate
-DISTVERSION=	5.0.5
+DISTVERSION=	5.0.6
 CATEGORIES=	biology
 MASTER_SITES=	https://peterbeerli.com/migrate-html5/download_version4/
 DISTNAME=	${PORTNAME}-${PORTVERSION}.src
@@ -33,6 +33,10 @@ OPTIONS_DEFINE=		DOCS EXAMPLES THREAD
 THREAD_DESC=		Build with THREAD support
 THREAD_ALL_TARGET=	thread
 
+# Upstream tarball contains objects and binaries that need to be clean
+post-extract:
+	cd ${WRKSRC} && ${RM} -f *.o haru/*.o migrate-n migrate-n-mpi
+
 post-patch:
 	@${REINPLACE_CMD} -e 's|="-O "|="$$CFLAGS"|g' ${WRKSRC}/configure
 	@${REINPLACE_CMD} -e '/PRETTY$$/d' ${WRKSRC}/src/definitions.h
diff --git a/biology/migrate/distinfo b/biology/migrate/distinfo
index 498a5f72dd3d..927666e293df 100644
--- a/biology/migrate/distinfo
+++ b/biology/migrate/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1711535851
-SHA256 (migrate-5.0.5.src.tar.gz) = 43d456f2432c0ec77ad33877f184d3b4b36f61e416f8fffa51077768df91ea51
-SIZE (migrate-5.0.5.src.tar.gz) = 4746835
+TIMESTAMP = 1711916315
+SHA256 (migrate-5.0.6.src.tar.gz) = 9772ae5bdc5be81af6830a9240aa5a0f90ae9fb52d70e46cf4f50a8b389f8925
+SIZE (migrate-5.0.6.src.tar.gz) = 8254038