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Tue, 11 Jun 2024 17:11:46 GMT (envelope-from git) Date: Tue, 11 Jun 2024 17:11:46 GMT Message-Id: <202406111711.45BHBk4F062968@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 2a46a41f8c5e - main - biology/unikmer: update 0.19.1 =?utf-8?Q?=E2=86=92?= 0.20.0 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-main@freebsd.org Sender: owner-dev-commits-ports-main@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 2a46a41f8c5e905625f30d752260f8bd2bb90d27 Auto-Submitted: auto-generated The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=2a46a41f8c5e905625f30d752260f8bd2bb90d27 commit 2a46a41f8c5e905625f30d752260f8bd2bb90d27 Author: Älven AuthorDate: 2024-06-11 17:11:06 +0000 Commit: Yuri Victorovich CommitDate: 2024-06-11 17:11:41 +0000 biology/unikmer: update 0.19.1 → 0.20.0 PR: 279674 --- biology/unikmer/Makefile | 9 +++------ biology/unikmer/distinfo | 14 +++++++------- biology/unikmer/pkg-descr | 8 ++++---- 3 files changed, 14 insertions(+), 17 deletions(-) diff --git a/biology/unikmer/Makefile b/biology/unikmer/Makefile index 4962347c0370..05541b6b6775 100644 --- a/biology/unikmer/Makefile +++ b/biology/unikmer/Makefile @@ -1,12 +1,11 @@ PORTNAME= unikmer DISTVERSIONPREFIX= v -DISTVERSION= 0.19.1 -PORTREVISION= 13 +DISTVERSION= 0.20.0 CATEGORIES= biology MAINTAINER= yuri@FreeBSD.org COMMENT= Toolkit for nucleic acid k-mer analysis, set operations on k-mers -WWW= https://github.com/shenwei356/unikmer +WWW= https://github.com/shenwei356/unikmer/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE @@ -15,7 +14,7 @@ TEST_DEPENDS= csvtk:science/csvtk USES= go:modules perl5 USE_GITHUB= nodefault -GH_TUPLE= golang:sys:v0.6.0:sys +GH_TUPLE= golang:sys:v0.21.0:sys USE_PERL5= test GO_MODULE= github.com/shenwei356/unikmer @@ -23,8 +22,6 @@ GO_TARGET= ./${PORTNAME} PLIST_FILES= bin/${PORTNAME} -PORTSCOUT= ignore:0.20.0 # ignore bogus version - pre-patch: ${RM} -r ${WRKSRC}/vendor/golang.org/x/sys ${LN} -s ${WRKDIR}/sys-* ${WRKSRC}/vendor/golang.org/x/sys diff --git a/biology/unikmer/distinfo b/biology/unikmer/distinfo index 0c294c0ed48c..b01923bc8ee7 100644 --- a/biology/unikmer/distinfo +++ b/biology/unikmer/distinfo @@ -1,7 +1,7 @@ -TIMESTAMP = 1679318811 -SHA256 (go/biology_unikmer/unikmer-v0.19.1/v0.19.1.mod) = 7b62d5cd96cb392e6b06bec08dc810fbe1dda7a2201e95e2ff04a3c631048347 -SIZE (go/biology_unikmer/unikmer-v0.19.1/v0.19.1.mod) = 1359 -SHA256 (go/biology_unikmer/unikmer-v0.19.1/v0.19.1.zip) = d2a25e1fb9eb1701de64f843de9653adf02bf343324c236d08f5d510d6c8e3d2 -SIZE (go/biology_unikmer/unikmer-v0.19.1/v0.19.1.zip) = 4286117 -SHA256 (go/biology_unikmer/unikmer-v0.19.1/golang-sys-v0.6.0_GH0.tar.gz) = b4f6d17c7a128f76169964b437cb66b3f2dbf9a33361928ec19dfecf7b03fc54 -SIZE (go/biology_unikmer/unikmer-v0.19.1/golang-sys-v0.6.0_GH0.tar.gz) = 1434234 +TIMESTAMP = 1718108535 +SHA256 (go/biology_unikmer/unikmer-v0.20.0/v0.20.0.mod) = c0a619c514e9cf08be0a50dc494e8e890446a40d4b82043a2624b215ecc6b65e +SIZE (go/biology_unikmer/unikmer-v0.20.0/v0.20.0.mod) = 1455 +SHA256 (go/biology_unikmer/unikmer-v0.20.0/v0.20.0.zip) = 2e4625ea253e3b571ccfd30fb9d825bee13a3d49e1b665a9a5d3e2a647a60e9c +SIZE (go/biology_unikmer/unikmer-v0.20.0/v0.20.0.zip) = 4288447 +SHA256 (go/biology_unikmer/unikmer-v0.20.0/golang-sys-v0.21.0_GH0.tar.gz) = 06e5676d2c61345151e302c7138dd1282ce8ea3c5a6a5a03b7cb66a16c66dc22 +SIZE (go/biology_unikmer/unikmer-v0.20.0/golang-sys-v0.21.0_GH0.tar.gz) = 1495683 diff --git a/biology/unikmer/pkg-descr b/biology/unikmer/pkg-descr index 07f1ffcf165a..7421499c5d9c 100644 --- a/biology/unikmer/pkg-descr +++ b/biology/unikmer/pkg-descr @@ -1,10 +1,10 @@ unikmer is a golang package and a toolkit for nucleic acid k-mer analysis, -providing functions including set operation k-mers (sketch) optional with TaxIds -but without count information. +providing functions including set operation k-mers (sketch) optional with +TaxIds but without count information. K-mers are either encoded (k<=32) or hashed (arbitrary k) into uint64, and serialized in binary file with extension .unik. TaxIds can be assigned when counting k-mers from genome sequences, and LCA -(Lowest Common Ancestor) is computed during set opertions including computing -union, intersecton, set difference, unique and repeated k-mers. +(Lowest Common Ancestor) is computed during set opertions including +computing union, intersecton, set difference, unique and repeated k-mers.