From nobody Mon Jun 03 11:39:19 2024 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4VtBZv5Pt2z5MMpK; Mon, 03 Jun 2024 11:39:19 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4VtBZv4swtz4WbM; Mon, 3 Jun 2024 11:39:19 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1717414759; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=8DML392tp3LT9LmeGcdRuFIOfbIPKjnKft2VV4qkSOg=; b=BtMULHXFDovSV+pc5USqRKQSrfhV7rQIBTas/A6/mwkINgzq/knXNErNgmRARud0/tIpKu jitOpBkbnoaoQQEfkKOHOXMOUHaEdEfeNscwwHx+yqegiDTVOyHfulebNhZnFy+nrWmLyH 1q2q915zZXaj07/kxRW3rLd5izZ4Tj+xiCU8Gq4nzI5imRY9PqrRllRS+ZxbEtkWyHXv3Z iC+xUJE7zPNt3KG243HX8BQvs/fgVEXgs+p74KVwPzluL4Y6/mEo2mCKva5zrZgG+ybHfu WZlxd3pAdpAJItfbGooslpITu6IDbIPaxuYxy7mvHeCd4cxihn3iP/PwRjJOSQ== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1717414759; a=rsa-sha256; cv=none; b=mTE+Eu44Bck5GrgJe3a5KPhSL8UM5PaH3iY2LpCo7XxcDZHvxLlDTzQV5IW7AuhzgYi1Jk LmdHqkeuzCYn65OC389smBZkX0sFWR2MdrhTl1SPxEAXwkFu1htpISPIXDtXiEIWdWFKsg wQAq1UPEwaw5PNiCc639Ywezegwto5n/elDz8haryG/rXG//aBGDIiXUs19HhNqGmTmgBS U6tsQy3G80xgOdnFEhG4+ZN9NS7dLZj/4YCF+gRHFjhcpn4GN/UG/kM2u1gd0kwLY5BHTX tZkwqRKEpwa55UlaZZMmMfZNldxlKMLN5T4nJ6Lpy4hBeptFs4aYsxUxWyMNsQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1717414759; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=8DML392tp3LT9LmeGcdRuFIOfbIPKjnKft2VV4qkSOg=; b=MWL2kMcD/2c79epNkYPAF6Kg5ZNAqWf5ELzJoUpGkVBT9kGrL2v72NcxD/0isyyLZPfbC4 IFGuONROBIxdlRSBb53rPt8bioPK++zt/O2y+tcB3HRvlBgc4/qx8X2dNsiXCRk8+GE6g1 7GgBs5ldq0dzAT0OZO3C2VP0Poq2c0fyqzLE1/qLWMXNqxwo3MaUYaNso2Hu0Hl3Fq4r4q eRjhQobtWj2JyWeENUTItWCZdhDiSVPorhE7+3VZ1RCWgntOom7yQs+hd0nyzD/LdnQyDL QUkL88D0Nqyd/RxYo6ZKMHwonZhswb+UrFFrJOxyDMuhK9zd6gy/vqlHWP3yMw== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4VtBZv4MQyzYmZ; Mon, 3 Jun 2024 11:39:19 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 453BdJdg069135; Mon, 3 Jun 2024 11:39:19 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 453BdJtL069132; Mon, 3 Jun 2024 11:39:19 GMT (envelope-from git) Date: Mon, 3 Jun 2024 11:39:19 GMT Message-Id: <202406031139.453BdJtL069132@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: b8732315154d - main - biology/biostar-tools: Update to 1.11 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-main@freebsd.org Sender: owner-dev-commits-ports-main@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: b8732315154d075cbb8288fd3799961ed0721a1c Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=b8732315154d075cbb8288fd3799961ed0721a1c commit b8732315154d075cbb8288fd3799961ed0721a1c Author: Jason W. Bacon AuthorDate: 2024-06-03 11:38:30 +0000 Commit: Jason W. Bacon CommitDate: 2024-06-03 11:38:30 +0000 biology/biostar-tools: Update to 1.11 Drop abandonware py-pywgsim dep Reported by: pkg-fallout --- biology/biostar-tools/Makefile | 4 +--- biology/biostar-tools/distinfo | 2 +- 2 files changed, 2 insertions(+), 4 deletions(-) diff --git a/biology/biostar-tools/Makefile b/biology/biostar-tools/Makefile index 8163303759cf..ae02abc2c890 100644 --- a/biology/biostar-tools/Makefile +++ b/biology/biostar-tools/Makefile @@ -1,6 +1,5 @@ PORTNAME= biostar-tools -PORTVERSION= 1.10.1 -PORTREVISION= 3 +PORTVERSION= 1.11 CATEGORIES= biology python MAINTAINER= jwb@FreeBSD.org @@ -59,7 +58,6 @@ RUN_DEPENDS= wget>0:ftp/wget \ Jellyfish>0:biology/jellyfish \ mafft>0:biology/mafft \ clustal-omega>0:biology/clustal-omega \ - ${PYTHON_PKGNAMEPREFIX}pywgsim>0:biology/py-pywgsim@${PY_FLAVOR} \ sam2pairwise>0:biology/sam2pairwise \ kallisto>0:biology/kallisto \ bamutil>0:biology/bamutil \ diff --git a/biology/biostar-tools/distinfo b/biology/biostar-tools/distinfo index 04755b578d3c..19b785822b56 100644 --- a/biology/biostar-tools/distinfo +++ b/biology/biostar-tools/distinfo @@ -1 +1 @@ -TIMESTAMP = 1708090899 +TIMESTAMP = 1717414690