git: 692a8edf05a1 - main - science/py-hoomd-blue: update 4.7.0 → 4.8.1

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From: Yuri Victorovich <yuri_at_FreeBSD.org>
Date: Thu, 18 Jul 2024 20:07:40 UTC
The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=692a8edf05a1028c3c4068950489765b2e223064

commit 692a8edf05a1028c3c4068950489765b2e223064
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2024-07-18 20:07:29 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2024-07-18 20:07:38 +0000

    science/py-hoomd-blue: update 4.7.0 → 4.8.1
---
 science/py-hoomd-blue/Makefile  |  3 +--
 science/py-hoomd-blue/distinfo  |  6 +++---
 science/py-hoomd-blue/pkg-plist | 43 ++++++++++++++++++++++++++++++-----------
 3 files changed, 36 insertions(+), 16 deletions(-)

diff --git a/science/py-hoomd-blue/Makefile b/science/py-hoomd-blue/Makefile
index d9ac370e0be4..82e94d469656 100644
--- a/science/py-hoomd-blue/Makefile
+++ b/science/py-hoomd-blue/Makefile
@@ -1,7 +1,6 @@
 PORTNAME=	hoomd-blue
 DISTVERSIONPREFIX=	v
-DISTVERSION=	4.7.0
-PORTREVISION=	1
+DISTVERSION=	4.8.1
 CATEGORIES=	science # physics
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
diff --git a/science/py-hoomd-blue/distinfo b/science/py-hoomd-blue/distinfo
index 124e75efda3b..1fffc788de9d 100644
--- a/science/py-hoomd-blue/distinfo
+++ b/science/py-hoomd-blue/distinfo
@@ -1,6 +1,6 @@
-TIMESTAMP = 1719433002
-SHA256 (glotzerlab-hoomd-blue-v4.7.0_GH0.tar.gz) = be50dfb513ba17a651bbdf3472cc785b0f6dbae0f2446cbe4ab826447ad96736
-SIZE (glotzerlab-hoomd-blue-v4.7.0_GH0.tar.gz) = 2855838
+TIMESTAMP = 1721323733
+SHA256 (glotzerlab-hoomd-blue-v4.8.1_GH0.tar.gz) = b6e7fcca3ba733a0c982e1c603984d176343a149418ae29a3534e943c9c162e0
+SIZE (glotzerlab-hoomd-blue-v4.8.1_GH0.tar.gz) = 2809776
 SHA256 (glotzerlab-upp11-0c1fb8d_GH0.tar.gz) = fe9db1b06fd504876e243c9031a594edbd0323e8337f908885f31cc980f642e9
 SIZE (glotzerlab-upp11-0c1fb8d_GH0.tar.gz) = 21024
 SHA256 (glotzerlab-nano-signal-slot-34223a4_GH0.tar.gz) = bfe51f7dd2cc097b70202f849c1a42a13ea5f53a1e902e053df155c3a157c30b
diff --git a/science/py-hoomd-blue/pkg-plist b/science/py-hoomd-blue/pkg-plist
index 3140afba41cb..04a8bf079eda 100644
--- a/science/py-hoomd-blue/pkg-plist
+++ b/science/py-hoomd-blue/pkg-plist
@@ -42,7 +42,9 @@ lib/cmake/hoomd/hoomd-targets.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/_hpmc%%PYTHON_EXT_SUFFIX%%.so
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/compute.py
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/__init__.py
+%%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/external.py
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/field.py
+%%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/linear.py
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/user.py
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/external/wall.py
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/integrate.py
@@ -51,6 +53,7 @@ lib/cmake/hoomd/hoomd-targets.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/nec/tune.py
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/__init__.py
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/angular_step.py
+%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/expanded_gaussian.py
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/lennard_jones.py
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/pair.py
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pair/step.py
@@ -69,6 +72,7 @@ lib/cmake/hoomd/hoomd-targets.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_move_size_tuner.py
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_muvt.py
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_angular_step.py
+%%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_expanded_gaussian.py
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_lennard_jones.py
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_step.py
 %%PYTHON_SITELIBDIR%%/hoomd/hpmc/pytest/test_pair_union.py
@@ -120,8 +124,6 @@ lib/cmake/hoomd/hoomd-targets.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GPUArray.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GPUFlags.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GPUPartition.cuh
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GPUPolymorph.cuh
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GPUPolymorph.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GPUVector.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GSD.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GSDDequeWriter.h
@@ -478,6 +480,8 @@ lib/cmake/hoomd/hoomd-targets.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ExternalField.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ExternalFieldHarmonic.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ExternalFieldWall.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ExternalPotential.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/ExternalPotentialLinear.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/GPUHelpers.cuh
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/GPUTree.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/GSDHPMCSchema.h
@@ -502,6 +506,7 @@ lib/cmake/hoomd/hoomd-targets.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/OBBTree.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/PairPotential.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/PairPotentialAngularStep.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/PairPotentialExpandedGaussian.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/PairPotentialLennardJones.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/PairPotentialStep.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/PairPotentialUnion.h
@@ -682,28 +687,33 @@ lib/cmake/hoomd/hoomd-targets.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/metal/EAMForceCompute.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/metal/EAMForceComputeGPU.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/ATCollisionMethod.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/BlockForce.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/BounceBackNVE.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/BoundaryCondition.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/BounceBackStreamingMethod.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/BulkGeometry.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/BulkStreamingMethod.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/CellCommunicator.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/CellList.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/CellThermoCompute.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/CollisionMethod.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/Communicator.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/CommunicatorUtilities.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/ConfinedStreamingMethod.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/ExternalField.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/ConstantForce.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/Integrator.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/ManualVirtualParticleFiller.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/NoForce.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/ParallelPlateGeometry.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/ParallelPlateGeometryFiller.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/ParticleData.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/ParticleDataSnapshot.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/ParticleDataUtilities.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/PlanarPoreGeometry.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/PlanarPoreGeometryFiller.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/RejectionVirtualParticleFiller.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/SRDCollisionMethod.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/SlitGeometry.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/SlitGeometryFiller.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/SlitPoreGeometry.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/SlitPoreGeometryFiller.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/SineForce.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/Sorter.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/StreamingGeometry.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/SphereGeometry.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/StreamingMethod.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/mpcd/VirtualParticleFiller.h
 %%PYTHON_SITELIBDIR%%/hoomd/libquickhull.so
@@ -802,12 +812,23 @@ lib/cmake/hoomd/hoomd-targets.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/mpcd/__init__.py
 %%PYTHON_SITELIBDIR%%/hoomd/mpcd/_mpcd%%PYTHON_EXT_SUFFIX%%.so
 %%PYTHON_SITELIBDIR%%/hoomd/mpcd/collide.py
+%%PYTHON_SITELIBDIR%%/hoomd/mpcd/fill.py
 %%PYTHON_SITELIBDIR%%/hoomd/mpcd/force.py
+%%PYTHON_SITELIBDIR%%/hoomd/mpcd/geometry.py
 %%PYTHON_SITELIBDIR%%/hoomd/mpcd/integrate.py
+%%PYTHON_SITELIBDIR%%/hoomd/mpcd/methods.py
 %%PYTHON_SITELIBDIR%%/hoomd/mpcd/pytest/__init__.py
+%%PYTHON_SITELIBDIR%%/hoomd/mpcd/pytest/test_collide.py
+%%PYTHON_SITELIBDIR%%/hoomd/mpcd/pytest/test_fill.py
+%%PYTHON_SITELIBDIR%%/hoomd/mpcd/pytest/test_force.py
+%%PYTHON_SITELIBDIR%%/hoomd/mpcd/pytest/test_geometry.py
+%%PYTHON_SITELIBDIR%%/hoomd/mpcd/pytest/test_integrator.py
+%%PYTHON_SITELIBDIR%%/hoomd/mpcd/pytest/test_methods.py
 %%PYTHON_SITELIBDIR%%/hoomd/mpcd/pytest/test_snapshot.py
+%%PYTHON_SITELIBDIR%%/hoomd/mpcd/pytest/test_stream.py
+%%PYTHON_SITELIBDIR%%/hoomd/mpcd/pytest/test_tune.py
 %%PYTHON_SITELIBDIR%%/hoomd/mpcd/stream.py
-%%PYTHON_SITELIBDIR%%/hoomd/mpcd/update.py
+%%PYTHON_SITELIBDIR%%/hoomd/mpcd/tune.py
 %%PYTHON_SITELIBDIR%%/hoomd/operation.py
 %%PYTHON_SITELIBDIR%%/hoomd/operations.py
 %%PYTHON_SITELIBDIR%%/hoomd/pair_plugin/__init__.py