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Tue, 23 Apr 2024 08:40:58 GMT (envelope-from git) Date: Tue, 23 Apr 2024 08:40:58 GMT Message-Id: <202404230840.43N8ewxb051018@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 7336b01df94e - main - biology/checkm: update 1.2.0 =?utf-8?Q?=E2=86=92?= 1.2.2 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-main@freebsd.org Sender: owner-dev-commits-ports-main@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 7336b01df94e8c216fd24aa4281eb9ccde44e7a2 Auto-Submitted: auto-generated The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=7336b01df94e8c216fd24aa4281eb9ccde44e7a2 commit 7336b01df94e8c216fd24aa4281eb9ccde44e7a2 Author: Andrey Korobkov AuthorDate: 2024-04-23 08:39:42 +0000 Commit: Yuri Victorovich CommitDate: 2024-04-23 08:40:35 +0000 biology/checkm: update 1.2.0 → 1.2.2 PR: 278537 --- biology/checkm/Makefile | 3 +-- biology/checkm/distinfo | 6 +++--- biology/checkm/pkg-descr | 21 +++++++++++---------- 3 files changed, 15 insertions(+), 15 deletions(-) diff --git a/biology/checkm/Makefile b/biology/checkm/Makefile index 2c4869be30d1..811a6de08dfb 100644 --- a/biology/checkm/Makefile +++ b/biology/checkm/Makefile @@ -1,7 +1,6 @@ PORTNAME= CheckM DISTVERSIONPREFIX= v -DISTVERSION= 1.2.0 -PORTREVISION= 1 +DISTVERSION= 1.2.2 CATEGORIES= biology python MAINTAINER= yuri@FreeBSD.org diff --git a/biology/checkm/distinfo b/biology/checkm/distinfo index 3cf2dbad1752..733036b89632 100644 --- a/biology/checkm/distinfo +++ b/biology/checkm/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1651427292 -SHA256 (Ecogenomics-CheckM-v1.2.0_GH0.tar.gz) = 9d2f51409a72e90f1b59c811fa4d8b430051683ca0f3001aa770003f9201cd71 -SIZE (Ecogenomics-CheckM-v1.2.0_GH0.tar.gz) = 1017160 +TIMESTAMP = 1713784123 +SHA256 (Ecogenomics-CheckM-v1.2.2_GH0.tar.gz) = a748b94e93f8d5fecfd0d5b3f17fcb119b25d4b45217e047b2fd742b21e74c0e +SIZE (Ecogenomics-CheckM-v1.2.2_GH0.tar.gz) = 1017249 diff --git a/biology/checkm/pkg-descr b/biology/checkm/pkg-descr index e97d294a9794..109aed5efe23 100644 --- a/biology/checkm/pkg-descr +++ b/biology/checkm/pkg-descr @@ -1,10 +1,11 @@ -CheckM provides a set of tools for assessing the quality of genomes recovered -from isolates, single cells, or metagenomes. It provides robust estimates of -genome completeness and contamination by using collocated sets of genes that -are ubiquitous and single-copy within a phylogenetic lineage. Assessment of -genome quality can also be examined using plots depicting key genomic -characteristics (e.g., GC, coding density) which highlight sequences outside -the expected distributions of a typical genome. CheckM also provides tools for -identifying genome bins that are likely candidates for merging based on marker -set compatibility, similarity in genomic characteristics, and proximity within -a reference genome tree. +CheckM provides a set of tools for assessing the quality of genomes +recovered from isolates, single cells, or metagenomes. +It provides robust estimates of genome completeness and contamination +by using collocated sets of genes that are ubiquitous and single-copy +within a phylogenetic lineage. +Assessment of genome quality can also be examined using plots depicting +key genomic characteristics (e.g., GC, coding density) which highlight +sequences outside the expected distributions of a typical genome. +CheckM also provides tools for identifying genome bins that are likely +candidates for merging based on marker set compatibility, similarity in +genomic characteristics, and proximity within a reference genome tree.