From nobody Mon Apr 22 12:42:06 2024 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4VNPyl1dvbz5H1jQ; Mon, 22 Apr 2024 12:42:07 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4VNPyl03Q7z4Z9W; Mon, 22 Apr 2024 12:42:07 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1713789727; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=/ltGVvBFYOYyiG+aihrvZXKLLAPyPxejShrhwoWZ3G4=; b=BqL4mS1Fx8M5gA3va90e+m2R26Ii10OV6DzJ2Ma4RGjpJ2Xub3laNMf7ohmyiIy3WbJh+8 r+50vxI9QFdo70KvjA35bQMM/mUzR7i16H8xzSXCncnvZHZySKY4mbC+1MI4DIJy8nPIgg g7RZSoQnzaJpbViYrkYWAOT1l8QDlP/WsXVtB4mGcft3GgAYahB3PHTULXMLLpKTS0tRin j2OPJgju7wZJ5ikTeVywJ//aoXhBimJ7Vh7wL47ZbrdoRbvyJ2XFCs0rMwGkHDR9OUmlRL WxdOCQXZQZq+ktIV//QTjvXixDcnKlAzZSb5IMj/0AGlbgQI9UWNf/lJaudm0w== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1713789727; a=rsa-sha256; cv=none; b=LJsdMdem/Xqi4k/dTaTh0ic9qG1Nz/T+G5j9d40D6GFe6nTQZMQMjlFa6WpFhBYMzQFaxn 2l0B5IeNvjHLSwNskGcpKs85gB5a8dVsl++dEQl54n0JeA0DMiPr4h/kJOHQgKYuldu7Ea Ur2VCTIjR+QSDUoIczdvoh+g8nT+9v0R1VHc0DTxrLb2jB9Pp2MkkQjlGxKhVa6vX0sp4A VmI2VHjBvtdZtGKI5j3j0NDI+NZHliGqLJFp9/HhNB2ucZ5oc6d5qjUzkSmyTlZixz8vaK 2rISfQIPe8LhKGEZuPyN4IJVRSYQI+m/z6V6p0hL+zLUcCM3A/d3jo351TCxtw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1713789727; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=/ltGVvBFYOYyiG+aihrvZXKLLAPyPxejShrhwoWZ3G4=; b=NDevNPLj3MA0Zy5xOhg1Sg6CES88EXDzSDUPETuk1QorblAAlsWq13lYlJtglR0v9pFQhK t0Bw60gDbTjq35hKUnK0DLlDTnoxRjyCTHOmKEBFtqY3CWCC8Vn8z+OQC8tZRQ6CAiO0BC CzhGkj2AA3ba+NNQoCOa+7V1WTHl8ow+DPNd1npsAxjFTq5E9MoTIMLtHUx25t/Fa4ZArJ XxlzI5MTYwpeZK6ryTFKQRO6cDiu3SlPgblQl7RYlKpwQE5hO3U47KilBQhy5bVcxk4ksR eeIWINjwg/MIwNctcZG4Ct2q455R7vZI7zl4J2bTjBBHSTcW+J7Fs7ZN7dvZjw== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4VNPyk6ms1zpKX; Mon, 22 Apr 2024 12:42:06 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 43MCg6mi019036; Mon, 22 Apr 2024 12:42:06 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 43MCg6HE019033; Mon, 22 Apr 2024 12:42:06 GMT (envelope-from git) Date: Mon, 22 Apr 2024 12:42:06 GMT Message-Id: <202404221242.43MCg6HE019033@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 86c8816c2c85 - main - biology/vcflib: Update to 1.0.10 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-main@freebsd.org Sender: owner-dev-commits-ports-main@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 86c8816c2c852f4a7c04169ac9d9782b3ccb0fc9 Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=86c8816c2c852f4a7c04169ac9d9782b3ccb0fc9 commit 86c8816c2c852f4a7c04169ac9d9782b3ccb0fc9 Author: Jason W. Bacon AuthorDate: 2024-04-22 12:41:23 +0000 Commit: Jason W. Bacon CommitDate: 2024-04-22 12:42:04 +0000 biology/vcflib: Update to 1.0.10 A few bug fixes and code cleanup Changes: https://github.com/vcflib/vcflib/releases Reported by: portscout --- biology/vcflib/Makefile | 4 ++-- biology/vcflib/distinfo | 6 +++--- biology/vcflib/pkg-plist | 3 +-- 3 files changed, 6 insertions(+), 7 deletions(-) diff --git a/biology/vcflib/Makefile b/biology/vcflib/Makefile index 7adcd1d6051d..47503953ed1f 100644 --- a/biology/vcflib/Makefile +++ b/biology/vcflib/Makefile @@ -1,7 +1,6 @@ PORTNAME= vcflib DISTVERSIONPREFIX= v -DISTVERSION= 1.0.7 -PORTREVISION= 1 +DISTVERSION= 1.0.10 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -48,6 +47,7 @@ ZIG_CMAKE_OFF= -DZIG=OFF # Clang and GCC disable sse2 by default on i386, but it's required for vcflib CFLAGS_i386= -msse2 +# filevercmp is deprecated. Remove conflict when the port is removed. CONFLICTS_INSTALL= filevercmp libdisorder # include/disorder.h include/filevercmp.h include/pdflib.hpp .include diff --git a/biology/vcflib/distinfo b/biology/vcflib/distinfo index b8b4cf640ce0..e4d3f2180621 100644 --- a/biology/vcflib/distinfo +++ b/biology/vcflib/distinfo @@ -1,6 +1,6 @@ -TIMESTAMP = 1675907454 -SHA256 (ekg-vcflib-v1.0.7_GH0.tar.gz) = 37ddf471c5fec2c7fa5d1c2c2e80b3e9d30e401ee3b82156f6ae994652950a38 -SIZE (ekg-vcflib-v1.0.7_GH0.tar.gz) = 23546536 +TIMESTAMP = 1713703391 +SHA256 (ekg-vcflib-v1.0.10_GH0.tar.gz) = 6f7f366555e5b191a509bda6d7a2078825827458ba7e9922094c4c1ebb48e693 +SIZE (ekg-vcflib-v1.0.10_GH0.tar.gz) = 23539349 SHA256 (ekg-fastahack-bb33265_GH0.tar.gz) = f671609e1a8d7cacb00065bf307c90c46116af8e5cea939b06edcdbcc6d4bc2a SIZE (ekg-fastahack-bb33265_GH0.tar.gz) = 18760 SHA256 (ekg-filevercmp-df20dcc_GH0.tar.gz) = d34bec614be638e05eb6fa419c936b9e7de58d50b1a096a5ca02aadb7db6b059 diff --git a/biology/vcflib/pkg-plist b/biology/vcflib/pkg-plist index b612a8ab875b..20c3eeca8d4e 100644 --- a/biology/vcflib/pkg-plist +++ b/biology/vcflib/pkg-plist @@ -154,8 +154,7 @@ include/ssw.hpp include/ssw_cpp.hpp include/var.hpp include/vcf-c-api.h -include/vec128int.h -include/veclib_types.h +include/vcf-wfa.h lib/libvcflib.a %%ZIG%%lib/libzig.a lib/pyvcflib%%PYTHON_EXT_SUFFIX%%.so