git: 86c8816c2c85 - main - biology/vcflib: Update to 1.0.10

The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=86c8816c2c852f4a7c04169ac9d9782b3ccb0fc9

commit 86c8816c2c852f4a7c04169ac9d9782b3ccb0fc9
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2024-04-22 12:41:23 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2024-04-22 12:42:04 +0000

    biology/vcflib: Update to 1.0.10
    
    A few bug fixes and code cleanup
    Changes: https://github.com/vcflib/vcflib/releases
    
    Reported by:    portscout
---
 biology/vcflib/Makefile  | 4 ++--
 biology/vcflib/distinfo  | 6 +++---
 biology/vcflib/pkg-plist | 3 +--
 3 files changed, 6 insertions(+), 7 deletions(-)

diff --git a/biology/vcflib/Makefile b/biology/vcflib/Makefile
index 7adcd1d6051d..47503953ed1f 100644
--- a/biology/vcflib/Makefile
+++ b/biology/vcflib/Makefile
@@ -1,7 +1,6 @@
 PORTNAME=		vcflib
 DISTVERSIONPREFIX=	v
-DISTVERSION=		1.0.7
-PORTREVISION=		1
+DISTVERSION=		1.0.10
 CATEGORIES=		biology
 
 MAINTAINER=	jwb@FreeBSD.org
@@ -48,6 +47,7 @@ ZIG_CMAKE_OFF=	-DZIG=OFF
 # Clang and GCC disable sse2 by default on i386, but it's required for vcflib
 CFLAGS_i386=	-msse2
 
+# filevercmp is deprecated.  Remove conflict when the port is removed.
 CONFLICTS_INSTALL=	filevercmp libdisorder # include/disorder.h include/filevercmp.h include/pdflib.hpp
 
 .include <bsd.port.options.mk>
diff --git a/biology/vcflib/distinfo b/biology/vcflib/distinfo
index b8b4cf640ce0..e4d3f2180621 100644
--- a/biology/vcflib/distinfo
+++ b/biology/vcflib/distinfo
@@ -1,6 +1,6 @@
-TIMESTAMP = 1675907454
-SHA256 (ekg-vcflib-v1.0.7_GH0.tar.gz) = 37ddf471c5fec2c7fa5d1c2c2e80b3e9d30e401ee3b82156f6ae994652950a38
-SIZE (ekg-vcflib-v1.0.7_GH0.tar.gz) = 23546536
+TIMESTAMP = 1713703391
+SHA256 (ekg-vcflib-v1.0.10_GH0.tar.gz) = 6f7f366555e5b191a509bda6d7a2078825827458ba7e9922094c4c1ebb48e693
+SIZE (ekg-vcflib-v1.0.10_GH0.tar.gz) = 23539349
 SHA256 (ekg-fastahack-bb33265_GH0.tar.gz) = f671609e1a8d7cacb00065bf307c90c46116af8e5cea939b06edcdbcc6d4bc2a
 SIZE (ekg-fastahack-bb33265_GH0.tar.gz) = 18760
 SHA256 (ekg-filevercmp-df20dcc_GH0.tar.gz) = d34bec614be638e05eb6fa419c936b9e7de58d50b1a096a5ca02aadb7db6b059
diff --git a/biology/vcflib/pkg-plist b/biology/vcflib/pkg-plist
index b612a8ab875b..20c3eeca8d4e 100644
--- a/biology/vcflib/pkg-plist
+++ b/biology/vcflib/pkg-plist
@@ -154,8 +154,7 @@ include/ssw.hpp
 include/ssw_cpp.hpp
 include/var.hpp
 include/vcf-c-api.h
-include/vec128int.h
-include/veclib_types.h
+include/vcf-wfa.h
 lib/libvcflib.a
 %%ZIG%%lib/libzig.a
 lib/pyvcflib%%PYTHON_EXT_SUFFIX%%.so