From nobody Mon Apr 22 12:42:05 2024 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4VNPyj70rpz5H22c; Mon, 22 Apr 2024 12:42:05 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4VNPyj6YxMz4ZqG; Mon, 22 Apr 2024 12:42:05 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1713789725; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=96fTL5ahhhhd9wN4CFUcLWtlOv0ke6J5/fYjo7OcRlI=; b=H4FFVWoa+4yz2sxJbDoQm4tfHAdN9j6Gw/Vi5oeb+By935jVlovISAdoKqF7dxf6l4IhmM q/2M7sYPZC5aO6W1bMa0JbOKrkUAbW41mvByAdr97Opv5k6KCYS76r4NWPtxUQ+4/3wj0D 4ReIp3ZJv+uP8lLNrVZ2JMD920NF3/2Kq5strxpqSZhXLYnvRXib0x4JeIKsZfNe/hraYI s8eYnWY3yWAbyFCYgCOFDkJ1ZkUmeDjUxPcL6j4IpEILe3Ton7gqjXBbWvISS1Ghnv0tbd pO0HX6qFUEpJrj/MpeTy8Ok2Tob7/k68KjELsREU0E4kJ0wcGzJoJKJJphPglw== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1713789725; a=rsa-sha256; cv=none; b=R8hSHOB4IA0WuIMIvHzFtXUDPPnUdybmHSAt0vPvdtvueYPh871Ralc+tS0s5knpDc/9Rk kaAmdpqtBkRseYCfSfI5tRlYtk5IC9sw2Q5yC8HYemJO9O+yXKxk5FKMJjK197yx0dsnJW 2wOispJEXlzVDJeJPjvSv9KfphCDZvsc3y75l+K0p2AUMDbt7xxo1NQx9qqUZesbAcSzq8 fb2TR1qqsCGthYH8aCP6sB5l2/50PtQ1uCEWNOuwFD8Upe97iD2sFcao2SDcxnfm7HUGSQ bYztQLXau08Mu+oXaDQv7b2sZJP3G33/0kFlatJb9HsSgKZWXPPuoiJ9nBTE+A== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1713789725; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=96fTL5ahhhhd9wN4CFUcLWtlOv0ke6J5/fYjo7OcRlI=; b=POrZFxlCmf35Vw24rGXOmAThhNlmQuFPwlzEdERSIkaLlEiHQ6ApcN8aaPJopchXWdQVzE K734QDNNgeZosdq6a3q6kZaQKblg+RNOf5Dzpge+qg71cunFlBfs19cppYD3VUxq81a/Fi WNHxTAgVvhMaDmBUHp3qy2ELDUn/BMZApREVWnUYE3g6YipSNl9+rXK+cF5ldRzyeD6IKE Ko1Q/G83RWDw7H0egyM7UdiU1DZn+AtfFljXPvmnOt7oc/G1Ibey1qu+8H0L+dpP8/WEUV DH2ZHlSEkTSu6tbgYbh/xrkKQv0gT8y/PP+evjbo3nGnAEbMs6BRhCCmLBknAA== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4VNPyj696mzp8N; Mon, 22 Apr 2024 12:42:05 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 43MCg5L7018994; Mon, 22 Apr 2024 12:42:05 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 43MCg5Rb018991; Mon, 22 Apr 2024 12:42:05 GMT (envelope-from git) Date: Mon, 22 Apr 2024 12:42:05 GMT Message-Id: <202404221242.43MCg5Rb018991@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 1de14dfc3b4c - main - biology/wfa2-lib: Update to 2.3.5 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-main@freebsd.org Sender: owner-dev-commits-ports-main@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 1de14dfc3b4cc9a6fd04afd9a5e1dccb569993e1 Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=1de14dfc3b4cc9a6fd04afd9a5e1dccb569993e1 commit 1de14dfc3b4cc9a6fd04afd9a5e1dccb569993e1 Author: Jason W. Bacon AuthorDate: 2024-04-22 12:25:09 +0000 Commit: Jason W. Bacon CommitDate: 2024-04-22 12:42:04 +0000 biology/wfa2-lib: Update to 2.3.5 A few bug fixes. Changes: https://github.com/smarco/WFA2-lib/releases Reported by: portscout --- biology/wfa2-lib/Makefile | 2 +- biology/wfa2-lib/distinfo | 6 +++--- .../files/patch-wavefront_wavefront__extend__kernels.c | 11 ----------- 3 files changed, 4 insertions(+), 15 deletions(-) diff --git a/biology/wfa2-lib/Makefile b/biology/wfa2-lib/Makefile index a8a95a8229d4..ec1c0c6f3fd9 100644 --- a/biology/wfa2-lib/Makefile +++ b/biology/wfa2-lib/Makefile @@ -1,6 +1,6 @@ PORTNAME= wfa2-lib DISTVERSIONPREFIX= v -DISTVERSION= 2.3.4 +DISTVERSION= 2.3.5 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/wfa2-lib/distinfo b/biology/wfa2-lib/distinfo index ab50e1352a95..f654590ea8f9 100644 --- a/biology/wfa2-lib/distinfo +++ b/biology/wfa2-lib/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1695995337 -SHA256 (smarco-WFA2-lib-v2.3.4_GH0.tar.gz) = 3a02d19b45c7efcdcabdd956421b1e449e771fca0b0f072e02d7aa65ebb29f23 -SIZE (smarco-WFA2-lib-v2.3.4_GH0.tar.gz) = 4224505 +TIMESTAMP = 1713703314 +SHA256 (smarco-WFA2-lib-v2.3.5_GH0.tar.gz) = 2609d5f267f4dd91dce1776385b5a24a2f1aa625ac844ce0c3571c69178afe6e +SIZE (smarco-WFA2-lib-v2.3.5_GH0.tar.gz) = 4225016 diff --git a/biology/wfa2-lib/files/patch-wavefront_wavefront__extend__kernels.c b/biology/wfa2-lib/files/patch-wavefront_wavefront__extend__kernels.c deleted file mode 100644 index c46271b7a21e..000000000000 --- a/biology/wfa2-lib/files/patch-wavefront_wavefront__extend__kernels.c +++ /dev/null @@ -1,11 +0,0 @@ ---- wavefront/wavefront_extend_kernels.c.orig 2023-09-29 17:25:17 UTC -+++ wavefront/wavefront_extend_kernels.c -@@ -29,7 +29,7 @@ - * DESCRIPTION: WFA module for the "extension" of exact matches - */ - --#include -+#include - - #include "wavefront_extend_kernels.h" - #include "wavefront_termination.h"