git: 74f10ca31e56 - main - biology/py-scikit-bio: update 0.5.9 → 0.6.0

The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=74f10ca31e56a14e62fd5b4d5d8ca335030d5fdd

commit 74f10ca31e56a14e62fd5b4d5d8ca335030d5fdd
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2024-04-06 01:03:07 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2024-04-06 01:04:46 +0000

    biology/py-scikit-bio: update 0.5.9 → 0.6.0
    
    Reported by:    portscout
---
 biology/py-scikit-bio/Makefile | 7 ++++---
 biology/py-scikit-bio/distinfo | 6 +++---
 2 files changed, 7 insertions(+), 6 deletions(-)

diff --git a/biology/py-scikit-bio/Makefile b/biology/py-scikit-bio/Makefile
index 84fad483a3f0..03e22bd69308 100644
--- a/biology/py-scikit-bio/Makefile
+++ b/biology/py-scikit-bio/Makefile
@@ -1,5 +1,5 @@
 PORTNAME=	scikit-bio
-DISTVERSION=	0.5.9
+DISTVERSION=	0.6.0
 CATEGORIES=	biology education python
 MASTER_SITES=	PYPI
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
@@ -16,17 +16,18 @@ BROKEN_aarch64=	fails to build: invalid conversion between vector type '__m64' (
 BUILD_DEPENDS=	${PYNUMPY} \
 		${PY_SETUPTOOLS} \
 		${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR}
-RUN_DEPENDS=	${PYNUMPY} \
+RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}biom-format>0:biology/py-biom-format@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}decorator>=3.4.2:devel/py-decorator@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}h5py>=3.6.0:science/py-h5py@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}hdmedians>=0.14.1:math/py-hdmedians@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}ipython>=3.2.0:devel/ipython@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}matplotlib>=1.4.3:math/py-matplotlib@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}natsort>=4.0.3:devel/py-natsort@${PY_FLAVOR} \
+		${PYNUMPY} \
 		${PYTHON_PKGNAMEPREFIX}pandas>=1.5.0:math/py-pandas@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}requests>=2.20.0:www/py-requests@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.19.1:science/py-scikit-learn@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR}
+		${PYTHON_PKGNAMEPREFIX}scipy>=1.9.0:science/py-scipy@${PY_FLAVOR}
 
 USES=		python
 USE_PYTHON=	pep517 cython autoplist pytest # tests fail to run, see https://github.com/biocore/scikit-bio/issues/1846
diff --git a/biology/py-scikit-bio/distinfo b/biology/py-scikit-bio/distinfo
index d65c97d3f9c3..558a18b5c5f1 100644
--- a/biology/py-scikit-bio/distinfo
+++ b/biology/py-scikit-bio/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1691038332
-SHA256 (scikit-bio-0.5.9.tar.gz) = 7ae044dc8bee231900248adc3a8659077e76140d56ac9f42bd01fb7981014910
-SIZE (scikit-bio-0.5.9.tar.gz) = 3542513
+TIMESTAMP = 1712349674
+SHA256 (scikit-bio-0.6.0.tar.gz) = 10105a7c3c15ae5910244927f29ba7aa35234b19ebe6513b8484547343b2c10f
+SIZE (scikit-bio-0.6.0.tar.gz) = 1739407