From nobody Wed Oct 18 12:26:59 2023 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4S9VTc1Mq2z4wy9d; Wed, 18 Oct 2023 12:27:00 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4S9VTc0sbyz4Zfp; Wed, 18 Oct 2023 12:27:00 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1697632020; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=yL77YwRZNlvtGYH7gnfIMPiR9ZXbnTPooVGB7LSARtM=; b=CSO7/bgWSkkZQOh1XGNqpEpGFjbmKCfCEnJcO5tO0QKF3Yb8Fae46Uw39J38twFt4pWE0Y aq8lFbXIHebfRMxuIzoEUfJBGSlqMckkW6wHPgNhZIYbOQ1Zz7CKkHNvTO7yyOqDoz9EpJ UoaY0uI2s2Db1RFo5tQ50GA8m4gsTUVKEaNu96ZL6cY1P5+RYP19naFpBlv4kt3K66DLYH VaN4ePdhE4nxxScrKrNCfirbToeWZBN4GUCzWbkROXB/KmgWcm8bMRXDqMoHCyCcwfT7YD wLiy5lXWzvLaIyPBFUStklcCpwh3iaf5N6NySOPHnOZi8pDbEtimdB9N/eBbtQ== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1697632020; a=rsa-sha256; cv=none; b=av+ca8Qv1udzccrfXhSZ1hvNI1wUe7Qa6iezaKF6UAvP4Ny0VIqN87t4oaAIrBxO6N7Fku ll1geVbuOq3ugemGDqaLiho8iQONruWFM22L88yxntQNhmiJL+zf7XdUth5F8gQoUkekBa SKATunIaG0fHgYhv0epSTR1h0ETqlRDHily08Bam6ouQCegW0UzyTGPdBv/f7K5CXjUrsh cXCiafSkYlfWji/8A9F7+1BBw7JKgqxAAP1VnAJytzDPJtIgVdUoRkvBb4zX4B5qjpVezc 88EgHKA9MFzsWnPbrg9i1Willa+76eDDMGrs3Dj4DtKiWv691j9MEdNVIHqYow== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1697632020; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=yL77YwRZNlvtGYH7gnfIMPiR9ZXbnTPooVGB7LSARtM=; b=SIUDrLsHlSi1SwFUglsh/fKmhitkl0/qtVtHRo4QXZFbD/LwsO81tbl5k+o8nBCfXgKaD5 AjI0sz3YxOb+x3mCqb4OK89FDsCr0BW2czNtNKK0Mkr0HsC1JDsYYQk/egaLawaUmIeLx3 wIGKBMm82uI0+HdMU0OjAUFidKmLrjIWtc5r61cOs3PyPAd/q1+2p3ysnHmU5l7dXIb2bb OCsF7w+wuy+UhM8e1FbfHras0fiHfFYY0HO2ym317P4tvDjt8eV7II+RTExJ0iImEDcQih GjMokuYCrUJO6P2GT74M4dUGbBZ5zPQSPuLMid7Br+piBTvx8yVszO08aCAN2g== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4S9VTb6ySzz169f; Wed, 18 Oct 2023 12:26:59 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 39ICQxjG074496; Wed, 18 Oct 2023 12:26:59 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 39ICQxpX074493; Wed, 18 Oct 2023 12:26:59 GMT (envelope-from git) Date: Wed, 18 Oct 2023 12:26:59 GMT Message-Id: <202310181226.39ICQxpX074493@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: fee1d76936f6 - main - biology/bowtie2: Update to 2.5.2 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: fee1d76936f6a36a27b271d0dbe7685b4fd84cc0 Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=fee1d76936f6a36a27b271d0dbe7685b4fd84cc0 commit fee1d76936f6a36a27b271d0dbe7685b4fd84cc0 Author: Jason W. Bacon AuthorDate: 2023-10-18 12:26:11 +0000 Commit: Jason W. Bacon CommitDate: 2023-10-18 12:26:11 +0000 biology/bowtie2: Update to 2.5.2 A few bug fixes Changes: https://github.com/BenLangmead/bowtie2/releases Reported by: portscout --- biology/bowtie2/Makefile | 5 +++-- biology/bowtie2/distinfo | 6 +++--- 2 files changed, 6 insertions(+), 5 deletions(-) diff --git a/biology/bowtie2/Makefile b/biology/bowtie2/Makefile index 14777fb43760..88d57745908b 100644 --- a/biology/bowtie2/Makefile +++ b/biology/bowtie2/Makefile @@ -1,6 +1,6 @@ PORTNAME= bowtie2 DISTVERSIONPREFIX= v -DISTVERSION= 2.5.1 +DISTVERSION= 2.5.2 CATEGORIES= biology perl5 python MAINTAINER= jwb@FreeBSD.org @@ -10,8 +10,9 @@ WWW= https://github.com/BenLangmead/bowtie2 LICENSE= GPLv3+ LICENSE_FILE= ${WRKSRC}/LICENSE -# Requires a 64-bit processor and depends on hard-coded asm instructions ONLY_FOR_ARCHS= aarch64 amd64 powerpc64 powerpc64le +ONLY_FOR_ARCHS_REASON= Requires a 64-bit processor + RUN_DEPENDS= bash:shells/bash USES= gmake localbase:ldflags perl5 python shebangfix diff --git a/biology/bowtie2/distinfo b/biology/bowtie2/distinfo index 69c8b6900f9a..fd7a62f2ce84 100644 --- a/biology/bowtie2/distinfo +++ b/biology/bowtie2/distinfo @@ -1,5 +1,5 @@ -TIMESTAMP = 1674338476 -SHA256 (BenLangmead-bowtie2-v2.5.1_GH0.tar.gz) = 3fe00f4f89b5dd85fd9317e2168ec93f30dbb75d7950a08516c767d21eca7c27 -SIZE (BenLangmead-bowtie2-v2.5.1_GH0.tar.gz) = 10598627 +TIMESTAMP = 1697555094 +SHA256 (BenLangmead-bowtie2-v2.5.2_GH0.tar.gz) = 2f86dbfbf3dcb8521d559f830594fe28ac6e4c40d81313a8c2bfb17c82a501e0 +SIZE (BenLangmead-bowtie2-v2.5.2_GH0.tar.gz) = 10632647 SHA256 (simd-everywhere-simde-no-tests-f6a0b3b_GH0.tar.gz) = 9874f22afe8a6cd92770aa194df47db3d0963d80ea233a502b0d557f59763eb8 SIZE (simd-everywhere-simde-no-tests-f6a0b3b_GH0.tar.gz) = 397743