From nobody Sat May 27 04:30:45 2023 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4QSpkZ54Gwz4WTNB; Sat, 27 May 2023 04:30:46 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4QSpkY5d18z4SVX; Sat, 27 May 2023 04:30:45 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1685161845; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=ZUxnqamRaOHkW9wOGKIy849sED8R/dfx0ffGqZSaxQE=; b=J3rEk70qWujlvq+UVIPpjSwDCgn9zfEWDoHddCCCK6410RVu5sHIexguCHK+XGF9PoEkvU EK3EQ4RS1Dvkc/vjtd3zc7TtiFu03UcFjDCHOm/+vZPolmvJXomljHFBErK/DgjmpS53E2 /xevpsj0vJLGFAoa3rxx/hIThzIqbZocsreO+crAa1Q6lXi72TP7eoJY9iIzfZiKm7vD94 sEOBu1hMn6nKU5vH5KVUmICqrnhBYntJZX5H3qCTr+UkxvPlTeXNd/VILkJzyapsEB5bEU xy5ADi0EhAMrPQSw6ski2I8D9oBn31tGJ4lRbRjyZUOOQ6ix1EOkSrFPFdfjTg== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1685161845; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=ZUxnqamRaOHkW9wOGKIy849sED8R/dfx0ffGqZSaxQE=; b=yZV2AkYuhz6q3XDES+TGTrh099HyVZ/HaQ6CKixMLUT1zvsCujD0GwOQoooiOME1UUzYh0 SnfvxjxZ60A0ZH7O0xr/0n1IvNYV5KmYfIB3BlyuzE/smctLXW8LefEkjogOlHeCv4liEy XxrB/V3ZZAc5cmTyKOnfGwr1MB9HtPXBZ6ivGDVDH+Abg3+78vBDYJlkebF3cRHhHr38iw 6ouyOt9NrI/rGoMkv7MV1nu5H5cQdoH+fZ4kr+yEdQ/hU37TknBK/KKAFbVK3E+zRejFwP AQZk5oqWFMB5Ff2YT8ZQtY/N3LjQRYrreaKnp2/DizKGhSthB0GCnTbwp7lBpg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1685161845; a=rsa-sha256; cv=none; b=rRv96cN3RCDOIxGBPy5ntbR3FR6cNWgdCwFPqlePVWUvLlXvq+Bs8FAxcRhcWw7KW3KkzZ kLqEA+OFmAmp7b1GIAfBMZze66W3iCTlT9WqGtuaRWbAft0FjEaXI8rkd+V+GanOMIxVfF PEpxRoaumaBsl4ZVp8w2ydMwwxdOdcLuHZJziWiGoPM3v9ExJNjqTRzDtO1JiXT2wtb2jB myidtpo5ZdTRNIH4r+ts6BqtP9uh5ZNgVOfnAuPjCkpyESTa2FoZtj3xoCBsAuH/s1soj6 kGHWLk2+ReO67MLZDJkEX3YxZQbcXkH2MHSVqv/zAdmuPBvRAJNz7+qOMogOtA== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4QSpkY4YJSzZmc; Sat, 27 May 2023 04:30:45 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 34R4UjZq037964; Sat, 27 May 2023 04:30:45 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 34R4UjGD037963; Sat, 27 May 2023 04:30:45 GMT (envelope-from git) Date: Sat, 27 May 2023 04:30:45 GMT Message-Id: <202305270430.34R4UjGD037963@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Po-Chuan Hsieh Subject: git: d80f50246cbf - main - biology/libcombine: Fix build with libsbml 5.20.0 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: sunpoet X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: d80f50246cbf0cafe274057987c9f34811ce21f5 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by sunpoet: URL: https://cgit.FreeBSD.org/ports/commit/?id=d80f50246cbf0cafe274057987c9f34811ce21f5 commit d80f50246cbf0cafe274057987c9f34811ce21f5 Author: Po-Chuan Hsieh AuthorDate: 2023-05-27 04:13:56 +0000 Commit: Po-Chuan Hsieh CommitDate: 2023-05-27 04:24:05 +0000 biology/libcombine: Fix build with libsbml 5.20.0 ===> Configuring for libcombine-0.2.20 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/libcombine/work/.build -- The CXX compiler identification is Clang 13.0.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for BZ2_bzCompressInit in /usr/lib/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib/libbz2.so - found -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) CMake Error at /usr/local/share/cmake/Modules/Internal/CheckSourceCompiles.cmake:51 (message): check_source_compiles: C: needs to be enabled before use. Call Stack (most recent call first): /usr/local/share/cmake/Modules/CheckCSourceCompiles.cmake:76 (cmake_check_source_compiles) CMakeModules/FindLIBXML.cmake:115 (CHECK_C_SOURCE_COMPILES) /usr/local/share/cmake/Modules/CMakeFindDependencyMacro.cmake:76 (find_package) /usr/local/lib/cmake/sbml-static-config.cmake:14 (find_dependency) CMakeModules/FindLIBSBML.cmake:42 (find_package) CMakeLists.txt:308 (find_package) -- LIBXML_LIBXML_TEST = CMake Error at /usr/local/share/cmake/Modules/Internal/CheckSourceCompiles.cmake:51 (message): check_source_compiles: C: needs to be enabled before use. Call Stack (most recent call first): /usr/local/share/cmake/Modules/CheckCSourceCompiles.cmake:76 (cmake_check_source_compiles) CMakeModules/FindLIBXML.cmake:125 (CHECK_C_SOURCE_COMPILES) /usr/local/share/cmake/Modules/CMakeFindDependencyMacro.cmake:76 (find_package) /usr/local/lib/cmake/sbml-static-config.cmake:14 (find_dependency) CMakeModules/FindLIBSBML.cmake:42 (find_package) CMakeLists.txt:308 (find_package) -- LIBXML_LIBXML_TEST2 = CMake Error at CMakeModules/FindLIBXML.cmake:132 (message): Unable to compile a test executable against LIBXML LIBXML_INCLUDE_DIR = /usr/local/include/libxml2 LIBXML_LIBRARY = /usr/local/lib/libxml2.so Call Stack (most recent call first): /usr/local/share/cmake/Modules/CMakeFindDependencyMacro.cmake:76 (find_package) /usr/local/lib/cmake/sbml-static-config.cmake:14 (find_dependency) CMakeModules/FindLIBSBML.cmake:42 (find_package) CMakeLists.txt:308 (find_package) -- Configuring incomplete, errors occurred! *** Error code 1 Stop. --- biology/libcombine/files/patch-CMakeLists.txt | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/biology/libcombine/files/patch-CMakeLists.txt b/biology/libcombine/files/patch-CMakeLists.txt new file mode 100644 index 000000000000..bec79c56523e --- /dev/null +++ b/biology/libcombine/files/patch-CMakeLists.txt @@ -0,0 +1,11 @@ +--- CMakeLists.txt.orig 2022-12-07 09:35:06 UTC ++++ CMakeLists.txt +@@ -44,7 +44,7 @@ set(LIBCOMBINE_VERSION "${LIBCOMBINE_VERSION_MAJOR}.${ + set(PACKAGE_NAME "libCombine") + + project(libCombine VERSION "${LIBCOMBINE_VERSION_MAJOR}.${LIBCOMBINE_VERSION_MINOR}.${LIBCOMBINE_VERSION_PATCH}" +- LANGUAGES CXX) ++ LANGUAGES C CXX) + + set(CMAKE_CXX_STANDARD 11) + set(CMAKE_CXX_STANDARD_REQUIRED ON)