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Mon, 20 Mar 2023 06:06:01 GMT (envelope-from git) Date: Mon, 20 Mar 2023 06:06:01 GMT Message-Id: <202303200606.32K661gl035344@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 9f5d0a66ddb8 - main - =?utf-8?Q?biology/py-scikit-bio:=20Update=200.5.7=20=E2=86=92=200.5.7?= List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 9f5d0a66ddb8a315dd8ef92754d90ad1ddddf8f8 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=9f5d0a66ddb8a315dd8ef92754d90ad1ddddf8f8 commit 9f5d0a66ddb8a315dd8ef92754d90ad1ddddf8f8 Author: Yuri Victorovich AuthorDate: 2023-03-20 06:05:44 +0000 Commit: Yuri Victorovich CommitDate: 2023-03-20 06:05:44 +0000 biology/py-scikit-bio: Update 0.5.7 → 0.5.7 Reported by: portscout --- biology/py-scikit-bio/Makefile | 12 +++++++++--- 1 file changed, 9 insertions(+), 3 deletions(-) diff --git a/biology/py-scikit-bio/Makefile b/biology/py-scikit-bio/Makefile index c2d78cbcac7b..2d1d90692cca 100644 --- a/biology/py-scikit-bio/Makefile +++ b/biology/py-scikit-bio/Makefile @@ -1,6 +1,5 @@ PORTNAME= scikit-bio -PORTVERSION= 0.5.7 -PORTREVISION= 2 +DISTVERSION= 0.5.7 CATEGORIES= biology education python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -29,7 +28,9 @@ RUN_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.3.0:science/py-scipy@${PY_FLAVOR} USES= python:3.7+ -USE_PYTHON= distutils cython autoplist +USE_PYTHON= distutils cython autoplist pytest # tests fail to run, see https://github.com/biocore/scikit-bio/issues/1846 + +TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} CONFLICTS_INSTALL= ${PYTHON_PKGNAMEPREFIX}ddtrace # lib/python3.8/site-packages/benchmarks/__init__.py @@ -40,4 +41,9 @@ CFLAGS+= -msse2 # workaround for https://github.com/biocore/scikit-bio/issues/17 CXXFLAGS+= -msse2 .endif +post-install: + @${STRIP_CMD} \ + ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/*/*${PYTHON_EXT_SUFFIX}.so \ + ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/*/*/*${PYTHON_EXT_SUFFIX}.so + .include