git: 7cc570e984aa - main - science/py-hoomd-blue: Update 3.11.0 → 4.0.0

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From: Yuri Victorovich <yuri_at_FreeBSD.org>
Date: Sun, 11 Jun 2023 07:56:03 UTC
The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=7cc570e984aa71350d96702a6203fe1995153ae8

commit 7cc570e984aa71350d96702a6203fe1995153ae8
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2023-06-11 06:31:43 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2023-06-11 07:55:54 +0000

    science/py-hoomd-blue: Update 3.11.0 → 4.0.0
    
    Reported by:    portscout
---
 science/py-hoomd-blue/Makefile  |  3 +--
 science/py-hoomd-blue/distinfo  |  6 +++---
 science/py-hoomd-blue/pkg-plist | 21 ++++++++-------------
 3 files changed, 12 insertions(+), 18 deletions(-)

diff --git a/science/py-hoomd-blue/Makefile b/science/py-hoomd-blue/Makefile
index 885e01cfc0bb..3ea58b1773f3 100644
--- a/science/py-hoomd-blue/Makefile
+++ b/science/py-hoomd-blue/Makefile
@@ -1,7 +1,6 @@
 PORTNAME=	hoomd-blue
 DISTVERSIONPREFIX=	v
-DISTVERSION=	3.11.0
-PORTREVISION=	2
+DISTVERSION=	4.0.0
 CATEGORIES=	science # physics
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
diff --git a/science/py-hoomd-blue/distinfo b/science/py-hoomd-blue/distinfo
index 37b744f625de..95e56cc02e13 100644
--- a/science/py-hoomd-blue/distinfo
+++ b/science/py-hoomd-blue/distinfo
@@ -1,6 +1,6 @@
-TIMESTAMP = 1681627309
-SHA256 (glotzerlab-hoomd-blue-v3.11.0_GH0.tar.gz) = b7f962ad301f3ed506f49cadf7f16ba6b7d49ddf5a6f7f5182d2ff5f99b0beb8
-SIZE (glotzerlab-hoomd-blue-v3.11.0_GH0.tar.gz) = 2796370
+TIMESTAMP = 1686461542
+SHA256 (glotzerlab-hoomd-blue-v4.0.0_GH0.tar.gz) = 751bf7f611260cd33776a1c11abeb253e0426bf47ceab105c775b4c714ffadb6
+SIZE (glotzerlab-hoomd-blue-v4.0.0_GH0.tar.gz) = 2765678
 SHA256 (glotzerlab-upp11-0c1fb8d_GH0.tar.gz) = fe9db1b06fd504876e243c9031a594edbd0323e8337f908885f31cc980f642e9
 SIZE (glotzerlab-upp11-0c1fb8d_GH0.tar.gz) = 21024
 SHA256 (glotzerlab-nano-signal-slot-34223a4_GH0.tar.gz) = bfe51f7dd2cc097b70202f849c1a42a13ea5f53a1e902e053df155c3a157c30b
diff --git a/science/py-hoomd-blue/pkg-plist b/science/py-hoomd-blue/pkg-plist
index ff19aa1be520..1f22ea4a1d04 100644
--- a/science/py-hoomd-blue/pkg-plist
+++ b/science/py-hoomd-blue/pkg-plist
@@ -116,9 +116,9 @@ lib/cmake/hoomd/hoomd-targets.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GPUPolymorph.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GPUVector.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GSD.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GSDDequeWriter.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GSDDumpWriter.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GSDReader.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GSDShapeSpecWriter.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/GlobalArray.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/HOOMDMPI.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/HOOMDMath.h
@@ -133,7 +133,6 @@ lib/cmake/hoomd/hoomd-targets.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/MPIConfiguration.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/ManagedArray.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/MeshDefinition.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/MeshGroupData.cuh
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/MeshGroupData.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/Messenger.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/ParticleData.cuh
@@ -291,7 +290,6 @@ lib/cmake/hoomd/hoomd-targets.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/cudacpu_host_defines.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/cudacpu_vector_functions.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/cudacpu_vector_types.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/dfftlib/CUDA_MPI.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/dfftlib/FindACML.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/dfftlib/FindLocalFFT.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/extern/dfftlib/FindMKL.cmake
@@ -480,7 +478,6 @@ lib/cmake/hoomd/hoomd-targets.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/GSDHPMCSchema.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/HPMCCounters.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/HPMCMiscFunctions.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/HPMCPrecisionSetup.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMC.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMono.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/hpmc/IntegratorHPMCMonoGPU.cuh
@@ -645,18 +642,13 @@ lib/cmake/hoomd/hoomd-targets.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TableDihedralForceComputeGPU.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepBD.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepBDGPU.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepBerendsen.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepBerendsenGPU.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepConstantPressure.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepConstantVolume.h
+%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepConstantVolumeGPU.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepLangevin.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepLangevinBase.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepLangevinGPU.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepNPTMTK.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepNPTMTKGPU.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepNVE.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepNVEGPU.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepNVTAlchemy.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepNVTMTK.h
-%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepNVTMTKGPU.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepRATTLEBD.h
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepRATTLEBDGPU.cuh
 %%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/md/TwoStepRATTLEBDGPU.h
@@ -730,6 +722,7 @@ lib/cmake/hoomd/hoomd-targets.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/md/methods/__init__.py
 %%PYTHON_SITELIBDIR%%/hoomd/md/methods/methods.py
 %%PYTHON_SITELIBDIR%%/hoomd/md/methods/rattle.py
+%%PYTHON_SITELIBDIR%%/hoomd/md/methods/thermostats.py
 %%PYTHON_SITELIBDIR%%/hoomd/md/minimize/__init__.py
 %%PYTHON_SITELIBDIR%%/hoomd/md/minimize/fire.py
 %%PYTHON_SITELIBDIR%%/hoomd/md/nlist.py
@@ -747,6 +740,7 @@ lib/cmake/hoomd/hoomd-targets.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_aniso_pair.py
 %%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_array_view.py
 %%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_bond.py
+%%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_burst_writer.py
 %%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_constant_force.py
 %%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_constrain_distance.py
 %%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_custom_force.py
@@ -760,7 +754,7 @@ lib/cmake/hoomd/hoomd-targets.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_integrate.py
 %%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_kernel_parameters.py
 %%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_manifolds.py
-%%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_meshbond.py
+%%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_meshpotential.py
 %%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_meta_wall_list.py
 %%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_methods.py
 %%PYTHON_SITELIBDIR%%/hoomd/md/pytest/test_minimize_fire.py
@@ -868,4 +862,5 @@ lib/cmake/hoomd/hoomd-targets.cmake
 %%PYTHON_SITELIBDIR%%/hoomd/write/custom_writer.py
 %%PYTHON_SITELIBDIR%%/hoomd/write/dcd.py
 %%PYTHON_SITELIBDIR%%/hoomd/write/gsd.py
+%%PYTHON_SITELIBDIR%%/hoomd/write/gsd_burst.py
 %%PYTHON_SITELIBDIR%%/hoomd/write/table.py