From nobody Thu Jun 08 02:40:04 2023 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Qc7jK3wCRz4Zmgv; Thu, 8 Jun 2023 02:40:05 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Qc7jK0c9fz3w7P; Thu, 8 Jun 2023 02:40:05 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1686192005; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=+IohLV/MGeOcbi5HR34VbnDGeNPThVYgqTLWHcJsD84=; b=DQRyOFYG1wmbqe40IIGplp+8aVLH8ZLtjLUuoXCv8l8ZzC3XaQjk3FWV3xp/HUL9inEQNr vSVhrpjDCtDyAzTRv1XTwl1Io/sUqSBc7vLCHQyovN9tx/0G272Y91FMfhMFLB/QTXksDQ dtBDjP5/rJchQgo/eknGyp6qqiynZ7t3ldCeyoKKVCng6o0OO0Tr0Q1pH5DXWYRp9xil5C WKPQRaUr4V3AUnN9lzjQY0PfXnbK/dUkwRwoXi4GZsmgOjtMW8XrGoGUYscjCaPCc9itQt 7h43un9+bHpjjcn4sbj7Ir+IKo9TzcAfptfJ/I1YGEI0VFRO2aFPal0Naw2bjQ== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1686192005; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=+IohLV/MGeOcbi5HR34VbnDGeNPThVYgqTLWHcJsD84=; b=Of4LsqZbySPFDAIVAbbGu4bEN4yu2c2V0Q2tio4/bCougyxvYTcvuZ4TuqfpuxeleznoyM 8o/R2i8NFQrmAc5wTQ6yiwPosxv86TCRcdj1M+aNIj3fjaKrkzKwpSdumi44zjjfhmL0eC KGH5UeIJV8CicdzNf6Ip/qwnVkIus/z7JCHLaI7zfgE3WP5PHrc7kSICw4Nsnda1+Mr45t 7AkhNauczGntIjP2DmwK7I2naVqzIvhejzW0QVNEVeahDbLI0kiape1bnA34rvXtLbVzSb oqj9qmIko5FjjXJFIRg3D8PxlJ/ULhPUsmyclxEBE6GeHUkT2on854HDfvkeiA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1686192005; a=rsa-sha256; cv=none; b=BUg24kozReAAJeIjzfisMnd/dcuFbH34xkCgilkjwcM4MwtUT+gh38VWj/D7q8CKJGVsy/ 4b1FWh8Xyytd4slkK07n8Yksb0kNhHMcUxSvuCeshGxX9PbZmMase+7rC6L5B8pxbk4TbT oAnpDMdJ7BHngJYsiQdGpaZEV+W9KICgnRbaGZ2b3SdKOBRRLvLlpB1FUrpDYJA/QDO6+Z bOhoIt6GtOX1luXbN6uyeGnjtmOZ82hgwDeTJhtimbI6NC/VRMalOcogOnpwpzXIzGNdWC YZ24vQcMGSKFqVUbNGHgQAmiv1MAJ7AlniP12xdRx7frSrB71VMJq9Tj0HdmoQ== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Qc7jJ6jnZzc6P; Thu, 8 Jun 2023 02:40:04 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 3582e4Yj081828; Thu, 8 Jun 2023 02:40:04 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 3582e4Gu081826; Thu, 8 Jun 2023 02:40:04 GMT (envelope-from git) Date: Thu, 8 Jun 2023 02:40:04 GMT Message-Id: <202306080240.3582e4Gu081826@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 09ff1e738916 - main - =?utf-8?Q?science/py-dipy:=20Update=201.6.0=20=E2=86=92=201.7.0?= List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 09ff1e738916531d81507197c1b0fb546a628fad Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=09ff1e738916531d81507197c1b0fb546a628fad commit 09ff1e738916531d81507197c1b0fb546a628fad Author: Yuri Victorovich AuthorDate: 2023-06-08 02:34:06 +0000 Commit: Yuri Victorovich CommitDate: 2023-06-08 02:40:00 +0000 science/py-dipy: Update 1.6.0 → 1.7.0 Also add the test target. Reported by: portscout --- science/py-dipy/Makefile | 21 ++++++++++++++++----- science/py-dipy/distinfo | 6 +++--- 2 files changed, 19 insertions(+), 8 deletions(-) diff --git a/science/py-dipy/Makefile b/science/py-dipy/Makefile index b92edeb48802..81012019f4e4 100644 --- a/science/py-dipy/Makefile +++ b/science/py-dipy/Makefile @@ -1,6 +1,5 @@ PORTNAME= dipy -DISTVERSION= 1.6.0 -PORTREVISION= 1 +DISTVERSION= 1.7.0 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -12,20 +11,32 @@ WWW= https://dipy.org/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -PY_DEPENDS= ${PYNUMPY} \ - ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}nibabel>0:science/py-nibabel@${PY_FLAVOR} \ + ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}statsmodels>0:math/py-statsmodels@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}tables>0:devel/py-tables@${PY_FLAVOR} # "ml" extra dependencies, see dipy/info.py +TEST_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}fury>0:graphics/py-fury@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} # "viz" extra dependencies, see dipy/info.py +TEST_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}cvxpy>0:math/py-cvxpy@${PY_FLAVOR} # "doc" extra dependencies, see dipy/info.py -USES= python:3.7+ +USES= python:3.7+ shebangfix USE_PYTHON= distutils cython concurrent autoplist pytest # pkg-plist also exists and contains files missing from the python-generated plist +SHEBANG_GLOB= *.sh + TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} post-install: ${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME}/*/*.so +do-test: + cd ${WRKSRC} && ${SETENV} ${TEST_ENV} tools/ci/run_tests.sh + .include diff --git a/science/py-dipy/distinfo b/science/py-dipy/distinfo index fdcc81039ef7..d31d0a143861 100644 --- a/science/py-dipy/distinfo +++ b/science/py-dipy/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1674023932 -SHA256 (dipy-1.6.0.tar.gz) = 41a8487689ddff32f6c45bd046548f9c89a66306779c57c64d7f31400cc4fd6d -SIZE (dipy-1.6.0.tar.gz) = 12070889 +TIMESTAMP = 1686151055 +SHA256 (dipy-1.7.0.tar.gz) = 59bb647128aae7793215c813bb8ea35dae260ac9f0d938c724064f0af5a05cc3 +SIZE (dipy-1.7.0.tar.gz) = 12389209