From nobody Thu Jan 12 19:02:59 2023 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4NtDTH2Xrsz2pPwy; Thu, 12 Jan 2023 19:02:59 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4NtDTH219Fz4Jmy; Thu, 12 Jan 2023 19:02:59 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1673550179; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=Abbtv/K7EKI/JUqMueND3VnKjM9UbHH1EuZ2HlDD8wA=; b=IEuozFRkvoofKtD0M/VKC1docHACpmjfgnLK5xKXNxwAcXKkiluJ5zWV8qezsUpqv2QSD/ G30bSzP8n7EgHMGI9N7OAWOHMpZUa/EITNBLbxeQtExnEpjKr9ccjJJfjCfEVrWCjEC15s XoaN2hX+q0IGSpLTqJnA8bvtpp8jBzB7il099x+g9fxBVqtAjW3GW7WpG+JhEScuQaO6Lz 2G+HYwU3/+KYgITdny+BqtNAp/ev7XkDe8h8PzXd7fVXBW9AsDUVfAyAd9iTPZo3Q8UT45 Wrgy0cz8exbjqSAWHP9jtQcLX/TraHcf03H3L6v+hqF/ccDllmRkE/uCMjoicw== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1673550179; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=Abbtv/K7EKI/JUqMueND3VnKjM9UbHH1EuZ2HlDD8wA=; b=g28ppJi8q3pn85eKc8OItzmsPjpj1ymqE/Q1asXCAZdIGqy/v2d8wV2WVpMstBb20Zk58t F/7sJerNorDelW24Dyy62d8m4VWX21rqjC8C86L487knagOabvKY4F2xPU4emMHxs0NL98 QGt9c+yTZHEfKvnT1b1oigYdOCMeiwcClokU0lR0rKtAYWYXPkb2aDwjCE1Lhb5SqbyvDI 5dCUEjsX/mlwQyyPJ4/JNCKDM6M6bhTxghOya25LzCU/ECHbpRttZmkdMrg+o1xD0j0XkY /iRo4wMFGBmsU5PqJ17t5huyNur8KSrkxZfRxpEj6y6SNJLEU4/u/RygAO60lw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1673550179; a=rsa-sha256; cv=none; b=qDqCfjtk/ICI3Ix4MW9rSIr3mLruXgLGR7pDyqbXuw3Lq6qhXLlMSLz0zISkJ/JLB4y8r1 FAea13Cnl8DUjq5D2PhRBp7/osMHL3Wr9F0P0O22Y2nqcYztjWPD8OGpVq6V9BDQW2TBa6 yDHNSC6Yzlzu6lutXGFxMHednwpPOXQDDgSv89auA1043WB5ZShRixlXo5Hc3wwQxnnGRc 4sKAaWbC0DKaPmd77Ef2JyEimwLrXA5Blx5MyCtGzTlq1PAQPPNuh9wAz1laKqkWB1TGSa jeKWJ521U1C4VgaLhGSt/DonJjhpZKdELBVMPIvQf0wyFEcLyAjaWUM5W+VGwA== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4NtDTH14vYzfVd; Thu, 12 Jan 2023 19:02:59 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 30CJ2x9m078181; Thu, 12 Jan 2023 19:02:59 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 30CJ2xlb078180; Thu, 12 Jan 2023 19:02:59 GMT (envelope-from git) Date: Thu, 12 Jan 2023 19:02:59 GMT Message-Id: <202301121902.30CJ2xlb078180@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 606c5fdfde82 - main - biology/rna-seq: Update to 0.1.1 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 606c5fdfde82d72c1d34830d0e8335555ed28e93 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=606c5fdfde82d72c1d34830d0e8335555ed28e93 commit 606c5fdfde82d72c1d34830d0e8335555ed28e93 Author: Jason W. Bacon AuthorDate: 2023-01-12 19:02:14 +0000 Commit: Jason W. Bacon CommitDate: 2023-01-12 19:02:14 +0000 biology/rna-seq: Update to 0.1.1 Fix WWW Add www/webbrowser for portable FastQC report viewing --- biology/rna-seq/Makefile | 7 ++++--- biology/rna-seq/distinfo | 2 +- 2 files changed, 5 insertions(+), 4 deletions(-) diff --git a/biology/rna-seq/Makefile b/biology/rna-seq/Makefile index bdba35652327..e48022711cfd 100644 --- a/biology/rna-seq/Makefile +++ b/biology/rna-seq/Makefile @@ -1,11 +1,11 @@ PORTNAME= rna-seq -DISTVERSION= 0.1.0 +DISTVERSION= 0.1.1 CATEGORIES= biology python MASTER_SITES= # empty MAINTAINER= jwb@FreeBSD.org COMMENT= Metaport for RNA-Seq analysis -WWW= https://example.com/rna-seq +WWW= https://github.com/auerlab/ LICENSE= BSD2CLAUSE @@ -19,7 +19,8 @@ RUN_DEPENDS= sra-tools>0:biology/sra-tools \ hisat2>0:biology/hisat2 \ samtools>0:biology/samtools \ igv>0:biology/igv \ - fasda>0:biology/fasda + fasda>0:biology/fasda \ + webbrowser>0:www/webbrowser USES= metaport python diff --git a/biology/rna-seq/distinfo b/biology/rna-seq/distinfo index 46e828c40768..012089e6842f 100644 --- a/biology/rna-seq/distinfo +++ b/biology/rna-seq/distinfo @@ -1 +1 @@ -TIMESTAMP = 1665354692 +TIMESTAMP = 1673550086