git: 82e85eb5bf49 - main - biology/R-cran-Biobase: New port
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Date: Fri, 15 Dec 2023 12:56:00 UTC
The branch main has been updated by bofh:
URL: https://cgit.FreeBSD.org/ports/commit/?id=82e85eb5bf499342674cc1fb30366cf0134d21aa
commit 82e85eb5bf499342674cc1fb30366cf0134d21aa
Author: Muhammad Moinur Rahman <bofh@FreeBSD.org>
AuthorDate: 2023-12-15 11:17:08 +0000
Commit: Muhammad Moinur Rahman <bofh@FreeBSD.org>
CommitDate: 2023-12-15 12:55:44 +0000
biology/R-cran-Biobase: New port
Functions that are needed by many other packages or which replace R
functions.
WWW: https://bioconductor.org/packages/Biobase
---
biology/Makefile | 1 +
biology/R-cran-Biobase/Makefile | 19 +++++++++++++++++++
biology/R-cran-Biobase/distinfo | 3 +++
biology/R-cran-Biobase/pkg-descr | 1 +
4 files changed, 24 insertions(+)
diff --git a/biology/Makefile b/biology/Makefile
index a1e02321c2a5..6f35c5481dc7 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -1,5 +1,6 @@
COMMENT = Biology
+ SUBDIR += R-cran-Biobase
SUBDIR += R-cran-BiocGenerics
SUBDIR += R-cran-BiocManager
SUBDIR += abyss
diff --git a/biology/R-cran-Biobase/Makefile b/biology/R-cran-Biobase/Makefile
new file mode 100644
index 000000000000..42f96c77d7ce
--- /dev/null
+++ b/biology/R-cran-Biobase/Makefile
@@ -0,0 +1,19 @@
+PORTNAME= Biobase
+PORTVERSION= 2.62.0
+CATEGORIES= biology
+MASTER_SITES= https://www.bioconductor.org/packages/release/bioc/src/contrib/
+DISTNAME= ${PORTNAME}_${PORTVERSION}
+
+MAINTAINER= bofh@FreeBSD.org
+COMMENT= Base functions for Bioconductor
+WWW= https://bioconductor.org/packages/Biobase
+
+LICENSE= ART20
+
+CRAN_DEPENDS= R-cran-BiocGenerics>=0.27.1:biology/R-cran-BiocGenerics
+BUILD_DEPENDS= ${CRAN_DEPENDS}
+RUN_DEPENDS= ${CRAN_DEPENDS}
+
+USES= cran:auto-plist,compiles
+
+.include <bsd.port.mk>
diff --git a/biology/R-cran-Biobase/distinfo b/biology/R-cran-Biobase/distinfo
new file mode 100644
index 000000000000..df3efd358691
--- /dev/null
+++ b/biology/R-cran-Biobase/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1702637713
+SHA256 (Biobase_2.62.0.tar.gz) = ef753acc499c2504e226bf76e0acc08b7aa370fc60cc369bb8ebc1913f57d37e
+SIZE (Biobase_2.62.0.tar.gz) = 1795862
diff --git a/biology/R-cran-Biobase/pkg-descr b/biology/R-cran-Biobase/pkg-descr
new file mode 100644
index 000000000000..9f55753715b5
--- /dev/null
+++ b/biology/R-cran-Biobase/pkg-descr
@@ -0,0 +1 @@
+Functions that are needed by many other packages or which replace R functions.