git: 6a0747976346 - main - biology/ncbi-blast+: Update to 2.14.1

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From: Jason W. Bacon <jwb_at_FreeBSD.org>
Date: Sat, 26 Aug 2023 12:57:05 UTC
The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=6a07479763460385abf17aa7e99d1c61981e37c9

commit 6a07479763460385abf17aa7e99d1c61981e37c9
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2023-08-26 12:55:21 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2023-08-26 12:57:04 +0000

    biology/ncbi-blast+: Update to 2.14.1
    
    A few minor fixes and enhancements
    Changes: https://www.ncbi.nlm.nih.gov/books/NBK131777/
    
    Reported by:    portscout
---
 biology/ncbi-blast+/Makefile  |  2 +-
 biology/ncbi-blast+/distinfo  |  6 +++---
 biology/ncbi-blast+/pkg-plist | 17 +++++++++++++++--
 3 files changed, 19 insertions(+), 6 deletions(-)

diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile
index 9d358d05ebd9..35bcdbfb1fe2 100644
--- a/biology/ncbi-blast+/Makefile
+++ b/biology/ncbi-blast+/Makefile
@@ -1,5 +1,5 @@
 PORTNAME=	ncbi-blast+
-DISTVERSION=	2.14.0
+DISTVERSION=	2.14.1
 CATEGORIES=	biology perl5 python
 MASTER_SITES=	https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \
 		https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/
diff --git a/biology/ncbi-blast+/distinfo b/biology/ncbi-blast+/distinfo
index a3b7142fbb2e..4af49f2b46ea 100644
--- a/biology/ncbi-blast+/distinfo
+++ b/biology/ncbi-blast+/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1685108714
-SHA256 (ncbi-blast-2.14.0+-src.tar.gz) = bf477f1b0c3b82f0b7a7094bf003a9a83e37e3b0716c1df799060c4feab17500
-SIZE (ncbi-blast-2.14.0+-src.tar.gz) = 28200227
+TIMESTAMP = 1692973880
+SHA256 (ncbi-blast-2.14.1+-src.tar.gz) = 712c2dbdf0fb13cc1c2d4f4ef5dd1ce4b06c3b57e96dfea8f23e6e99f5b1650e
+SIZE (ncbi-blast-2.14.1+-src.tar.gz) = 28258487
diff --git a/biology/ncbi-blast+/pkg-plist b/biology/ncbi-blast+/pkg-plist
index a432cd175519..a48efb2375e8 100644
--- a/biology/ncbi-blast+/pkg-plist
+++ b/biology/ncbi-blast+/pkg-plist
@@ -295,6 +295,11 @@ include/ncbi-tools++/common/test_data_path.h
 include/ncbi-tools++/connect/connect_export.h
 include/ncbi-tools++/connect/email_diag_handler.hpp
 include/ncbi-tools++/connect/error_codes.hpp
+include/ncbi-tools++/connect/ext/ncbi_crypt.h
+include/ncbi-tools++/connect/ext/ncbi_dblb.h
+include/ncbi-tools++/connect/ext/ncbi_dblb_svcmapper.hpp
+include/ncbi-tools++/connect/ext/ncbi_ifconf.h
+include/ncbi-tools++/connect/ext/ncbi_localnet.h
 include/ncbi-tools++/connect/impl/connect_misc.hpp
 include/ncbi-tools++/connect/impl/ncbi_uv_nghttp2.hpp
 include/ncbi-tools++/connect/impl/server_connection.hpp
@@ -321,7 +326,6 @@ include/ncbi-tools++/connect/ncbi_http_connector.h
 include/ncbi-tools++/connect/ncbi_http_session.hpp
 include/ncbi-tools++/connect/ncbi_iprange.h
 include/ncbi-tools++/connect/ncbi_ipv6.h
-include/ncbi-tools++/connect/ncbi_lbos.hpp
 include/ncbi-tools++/connect/ncbi_localip.h
 include/ncbi-tools++/connect/ncbi_localip.hpp
 include/ncbi-tools++/connect/ncbi_mbedtls.h
@@ -391,6 +395,7 @@ include/ncbi-tools++/connect/services/srv_connections.hpp
 include/ncbi-tools++/connect/services/srv_connections_expt.hpp
 include/ncbi-tools++/connect/services/util.hpp
 include/ncbi-tools++/connect/threaded_server.hpp
+include/ncbi-tools++/corelib/atomic_util.hpp
 include/ncbi-tools++/corelib/blob_storage.hpp
 include/ncbi-tools++/corelib/ddumpable.hpp
 include/ncbi-tools++/corelib/env_reg.hpp
@@ -424,6 +429,7 @@ include/ncbi-tools++/corelib/mswin_export.h
 include/ncbi-tools++/corelib/mswin_no_popup.h
 include/ncbi-tools++/corelib/ncbi_autoinit.hpp
 include/ncbi-tools++/corelib/ncbi_base64.h
+include/ncbi-tools++/corelib/ncbi_base_build_ver.h
 include/ncbi-tools++/corelib/ncbi_bswap.hpp
 include/ncbi-tools++/corelib/ncbi_config.hpp
 include/ncbi-tools++/corelib/ncbi_cookies.hpp
@@ -583,6 +589,7 @@ include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/stack.h
 include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/strfunc.h
 include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/strtod.h
 include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/swap.h
+include/ncbi-tools++/misc/jsonwrapp/rapidjson11/istreamasync.h
 include/ncbi-tools++/misc/jsonwrapp/rapidjson11/istreamwrapper.h
 include/ncbi-tools++/misc/jsonwrapp/rapidjson11/license.txt
 include/ncbi-tools++/misc/jsonwrapp/rapidjson11/memorybuffer.h
@@ -3588,7 +3595,6 @@ include/ncbi-tools++/objtools/edit/huge_file_process.hpp
 include/ncbi-tools++/objtools/edit/link_cds_mrna.hpp
 include/ncbi-tools++/objtools/edit/loc_edit.hpp
 include/ncbi-tools++/objtools/edit/mail_report.hpp
-include/ncbi-tools++/objtools/edit/mla_updater.hpp
 include/ncbi-tools++/objtools/edit/parse_text_options.hpp
 include/ncbi-tools++/objtools/edit/promote.hpp
 include/ncbi-tools++/objtools/edit/pub_fix.hpp
@@ -4829,6 +4835,9 @@ include/ncbi-tools++/util/rangemap.hpp
 include/ncbi-tools++/util/rangemap.inl
 include/ncbi-tools++/util/reader_writer.hpp
 include/ncbi-tools++/util/regexp.hpp
+include/ncbi-tools++/util/regexp/ctre/LICENSE
+include/ncbi-tools++/util/regexp/ctre/ctre-unicode.hpp
+include/ncbi-tools++/util/regexp/ctre/ctre.hpp
 include/ncbi-tools++/util/regexp/pcre.h
 include/ncbi-tools++/util/regexp/pcrecpp.h
 include/ncbi-tools++/util/regexp/pcrecpparg.h
@@ -4917,6 +4926,8 @@ lib/ncbi-tools++/libcomposition_adjustment-static.a
 lib/ncbi-tools++/libcomposition_adjustment.a
 lib/ncbi-tools++/libconnect-static.a
 lib/ncbi-tools++/libconnect.a
+lib/ncbi-tools++/libconnext-static.a
+lib/ncbi-tools++/libconnext.a
 lib/ncbi-tools++/libconnssl-static.a
 lib/ncbi-tools++/libconnssl.a
 lib/ncbi-tools++/libdbapi-static.a
@@ -5139,6 +5150,8 @@ lib/ncbi-tools++/libxcompress-static.a
 lib/ncbi-tools++/libxcompress.a
 lib/ncbi-tools++/libxconnect-static.a
 lib/ncbi-tools++/libxconnect.a
+lib/ncbi-tools++/libxconnext-static.a
+lib/ncbi-tools++/libxconnext.a
 lib/ncbi-tools++/libxconnserv-static.a
 lib/ncbi-tools++/libxconnserv.a
 lib/ncbi-tools++/libxcser-static.a