git: 67773b0db360 - main - biology/fasda: Update to 0.1.4

From: Jason W. Bacon <jwb_at_FreeBSD.org>
Date: Fri, 11 Aug 2023 20:44:47 UTC 
The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=67773b0db360dbd23843d82d0d63ba78da9e9457

commit 67773b0db360dbd23843d82d0d63ba78da9e9457
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2023-08-11 20:39:06 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2023-08-11 20:39:06 +0000

    biology/fasda: Update to 0.1.4
    
    Add --debug
    Replace --map-gene with --feature-type for more flexibility
    Use extended REs for gff3 feature selection (default = RNA$|transcript$|gene_segment$, same as transcript in GTF)
    Add --output-dir
    Support |-separated ID aliases (report last alias)
    Support outsourcing abundance calculation (default = stringtie)
    Several bug fixes and minor enhancements
    
    Changes: https://github.com/auerlab/fasda/releases
---
 biology/fasda/Makefile | 3 ++-
 biology/fasda/distinfo | 6 +++---
 2 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/biology/fasda/Makefile b/biology/fasda/Makefile
index e7dc7ed5a3a7..3c9823658748 100644
--- a/biology/fasda/Makefile
+++ b/biology/fasda/Makefile
@@ -1,5 +1,5 @@
 PORTNAME=	fasda
-DISTVERSION=	0.1.3
+DISTVERSION=	0.1.4
 CATEGORIES=	biology
 
 MAINTAINER=	jwb@FreeBSD.org
@@ -10,6 +10,7 @@ LICENSE=	BSD2CLAUSE
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 LIB_DEPENDS=	libxtend.so:devel/libxtend libbiolibc.so:biology/biolibc
+RUN_DEPENDS=	stringtie>0:biology/stringtie
 
 USES=		localbase
 USE_GITHUB=	yes
diff --git a/biology/fasda/distinfo b/biology/fasda/distinfo
index 388673460271..88743d780fa6 100644
--- a/biology/fasda/distinfo
+++ b/biology/fasda/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1686347287
-SHA256 (auerlab-fasda-0.1.3_GH0.tar.gz) = 1e1fb36327b63c53cd4286dbd6edfd89cf2bdc0899fe8d8b748b01fbb1d91d47
-SIZE (auerlab-fasda-0.1.3_GH0.tar.gz) = 59513
+TIMESTAMP = 1691756858
+SHA256 (auerlab-fasda-0.1.4_GH0.tar.gz) = 8e1b1536ff3c551c16b6ddca543378343e055a9b067ef5038e2b2f1fb2e874b9
+SIZE (auerlab-fasda-0.1.4_GH0.tar.gz) = 65254