From nobody Sun Oct 23 07:52:36 2022 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Mw9R83TNNz4gTlw; Sun, 23 Oct 2022 07:52:36 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Mw9R82zNHz42d1; Sun, 23 Oct 2022 07:52:36 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1666511556; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=PEh+9DvcEjvmi8T6ae29Ub5unmv15a1vI91Jvr2X55c=; b=CFAYxnzQWxsBi57fL1A/lZlz2GhXQiRJZ9SuzMD/FLCi//Pz+aOY4AQI3qaVos7zLxmOzk JDSO24bkPOexkCWAa7LoQ6z11vsGtb0sHLExDZEVJERpmloH/D46V6JMFtz++0pM7TEyyM RCvQNRhPn9ESttr+eOvObSIyGRvlEKNmW1YLvgVyzgHTEuXrmN8oyEPHvQ+l7dNQcCsoiG vZludHzfFgiiVJbyHkZEnW3tSb7q3K8tiWCcnY8OzSEqsl1kinWDdrNQwDtrjq8+908VAB w7KgEU3CjrngnTu0PdGnNuPcUQ6BgVTW3kZEbxW5ieEcUIF+GtUutHF2yVVDuw== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Mw9R825L0zq7f; Sun, 23 Oct 2022 07:52:36 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 29N7qaI5028943; Sun, 23 Oct 2022 07:52:36 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 29N7qaxM028942; Sun, 23 Oct 2022 07:52:36 GMT (envelope-from git) Date: Sun, 23 Oct 2022 07:52:36 GMT Message-Id: <202210230752.29N7qaxM028942@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: e93e2de8ba1c - main - science/py-chempy: Correct and add dependencies List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: e93e2de8ba1ca3245108e7be62c1dc97ec31bfd1 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1666511556; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=PEh+9DvcEjvmi8T6ae29Ub5unmv15a1vI91Jvr2X55c=; b=p/vuJVx2Q6shdJfuNlrGoOZFicekwt6YxLAkUcSMHxevhhC6Uj278zqSh7WivDqNXq7Ho5 bzC0OEPLcTaFvpDl0mcqMBoayroJ8A92mfsdQTTYwsZfyeFSs3F4OScVlkAScmj+MAlKG0 cRGd+4lnIB01iUI6cm9USOjofhZLUJxLwCpn4PmfPeZlK5/wcOcT6RJULTKLhH2lawtUCe A8banbweGra3aXTbQlFxwPA8S25ZRu2D3R0C818XtPict6NseSB93b8ktBAZctaa56Aqt9 K8FWLByse0YdxsGEe4DWk9i2F8+zqqy+kYh/fi6YSBxXTsb+GejXqhLF6UXZBg== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1666511556; a=rsa-sha256; cv=none; b=mFZAm7huOVfR715cSDU2uO1ftCI02gpEbzPRWYhnFIQWV7sUCUGE5EQ6e3fpTTtkjrbHK9 5r2eec4OxwBz2BmwBv56bUlhLstYa2lfBEoYKDqmd2ulFzeDR0szelAiVlkoAcbV/HG4QL 3X4I5k2+lkZXP73lj6RFKVKbmGF/UNdNxFwmjFjNUDcKr/A1uESVKrDEIzrCGMc7GbgDeQ 8b2XNf2V0de416IQq/IlGA79GqS5Jjb/ACJvzkmte4S9WZUto2ikJfO2osMIpmv57+3lJV EIEKwxOuDYTdMzXhLOM723ZXaE3T58o4KdS8wzQPavL/2sy3KZ2b6/I2XDIWuA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=e93e2de8ba1ca3245108e7be62c1dc97ec31bfd1 commit e93e2de8ba1ca3245108e7be62c1dc97ec31bfd1 Author: Yuri Victorovich AuthorDate: 2022-10-23 06:19:54 +0000 Commit: Yuri Victorovich CommitDate: 2022-10-23 07:52:32 +0000 science/py-chempy: Correct and add dependencies --- science/py-chempy/Makefile | 37 ++++++++++++++++--------------------- 1 file changed, 16 insertions(+), 21 deletions(-) diff --git a/science/py-chempy/Makefile b/science/py-chempy/Makefile index 3974b69fbb29..a31810ade744 100644 --- a/science/py-chempy/Makefile +++ b/science/py-chempy/Makefile @@ -1,6 +1,7 @@ PORTNAME= chempy DISTVERSION= 0.8.2 -CATEGORIES= science python +PORTREVISION= 1 +CATEGORIES= science python # chemistry MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -11,9 +12,9 @@ WWW= https://github.com/bjodah/chempy LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -PY_DEPENDS= \ - ${PYTHON_PKGNAMEPREFIX}dot2tex>=2.11.3:print/dot2tex@${PY_FLAVOR} \ +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}dot2tex>=2.11.3:print/dot2tex@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=2.2.3:math/py-matplotlib@${PY_FLAVOR} \ + ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}PuLP>=1.6.8:math/py-PuLP@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyneqsys>=0.5.5:math/py-pyneqsys@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyodesys>=0.14.1:math/py-pyodesys@${PY_FLAVOR} \ @@ -21,26 +22,18 @@ PY_DEPENDS= \ ${PYTHON_PKGNAMEPREFIX}quantities>=0.12.1:science/py-quantities@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>=1.0.1:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sym>=0.3.4:math/py-sym@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}sympy>=1.1.1:math/py-sympy@${PY_FLAVOR} \ - ${PYNUMPY} + ${PYTHON_PKGNAMEPREFIX}sympy>=1.1.1:math/py-sympy@${PY_FLAVOR} BUILD_DEPENDS= ${PY_DEPENDS} RUN_DEPENDS= ${PY_DEPENDS} -TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}black>0:devel/py-black@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-flakes>0:devel/py-pytest-flakes@${PY_FLAVOR} -USES= python:3.7+ pytest -USE_PYTHON= distutils autoplist +USES= python:3.8+ +USE_PYTHON= distutils autoplist pytest NO_ARCH= yes -# https://github.com/bjodah/chempy/issues/198 -PYTEST_BROKEN_TESTS= test_get_native__a_substance_no_composition \ - test_balance_stoichiometry__underdetermined \ - test_balance_stoichiometry__very_underdetermined \ - test_balance_stoichiometry__underdetermined__canoncial \ - test_balance_stoichiometry__substances__underdetermined \ - test_balance_stoichiometry__duplicates - CONFLICTS_INSTALL= ${PYTHON_PKGNAMEPREFIX}pymol # https://github.com/schrodinger/pymol-open-source/issues/100 OPTIONS_DEFINE= EXTRAS @@ -48,10 +41,12 @@ OPTIONS_DEFAULT= EXTRAS EXTRAS_DESC= Install optional dependencies for additional functionality EXTRAS_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}appdirs>0:devel/py-appdirs@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}bokeh>=0.11.1:www/py-bokeh@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pycodeexport>=0.1.2:devel/py-pycodeexport@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pycompilation>=0.4.3:devel/py-pycompilation@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pygslodeiv2>=0.9.1:math/py-pygslodeiv2@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pyodeint>=0.10.1:math/py-pyodeint@${PY_FLAVOR} + ${PYTHON_PKGNAMEPREFIX}bokeh>=0.13.0:www/py-bokeh@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}ipywidgets>0:devel/py-ipywidgets@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pycodeexport>=0.1.3:devel/py-pycodeexport@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pycompilation>=0.4.12:devel/py-pycompilation@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pygslodeiv2>=0.9.4:math/py-pygslodeiv2@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pyodeint>=0.10.4:math/py-pyodeint@${PY_FLAVOR} + # TODO pycvodes>=0.14.0, pykinsol>=0.1.6 .include