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Tue, 4 Oct 2022 04:06:26 GMT (envelope-from git) Date: Tue, 4 Oct 2022 04:06:26 GMT Message-Id: <202210040406.29446Qje028894@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: f83007151dea - main - biology/py-valerius: New port: Python bioinformatics tools List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: f83007151dea80e9f9cf09909f95ff4ea1cbab36 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; 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mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=f83007151dea80e9f9cf09909f95ff4ea1cbab36 commit f83007151dea80e9f9cf09909f95ff4ea1cbab36 Author: Yuri Victorovich AuthorDate: 2022-10-04 03:54:08 +0000 Commit: Yuri Victorovich CommitDate: 2022-10-04 04:06:22 +0000 biology/py-valerius: New port: Python bioinformatics tools --- biology/Makefile | 1 + biology/py-valerius/Makefile | 24 ++++++++++++++++++++++++ biology/py-valerius/distinfo | 3 +++ biology/py-valerius/pkg-descr | 3 +++ 4 files changed, 31 insertions(+) diff --git a/biology/Makefile b/biology/Makefile index 6d4c981769d2..1c570b26ebb9 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -175,6 +175,7 @@ SUBDIR += py-pywgsim SUBDIR += py-resdk SUBDIR += py-scikit-bio + SUBDIR += py-valerius SUBDIR += py-xenaPython SUBDIR += pyfasta SUBDIR += python-nexus diff --git a/biology/py-valerius/Makefile b/biology/py-valerius/Makefile new file mode 100644 index 000000000000..7f23f9c6d828 --- /dev/null +++ b/biology/py-valerius/Makefile @@ -0,0 +1,24 @@ +PORTNAME= valerius +DISTVERSIONPREFIX= v +DISTVERSION= 0.2 +CATEGORIES= biology python +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Python bioinformatics tools +WWW= https://github.com/samirelanduk/valerius + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE + +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} + +USES= python +USE_PYTHON= distutils autoplist + +USE_GITHUB= yes +GH_ACCOUNT= samirelanduk + +NO_ARCH= yes + +.include diff --git a/biology/py-valerius/distinfo b/biology/py-valerius/distinfo new file mode 100644 index 000000000000..05da43d0d3c2 --- /dev/null +++ b/biology/py-valerius/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1664855237 +SHA256 (samirelanduk-valerius-v0.2_GH0.tar.gz) = f4b206cd4e9ec56630f4f55a7064f7fbea302a8a6620cac832475c2260b917ab +SIZE (samirelanduk-valerius-v0.2_GH0.tar.gz) = 18486 diff --git a/biology/py-valerius/pkg-descr b/biology/py-valerius/pkg-descr new file mode 100644 index 000000000000..30c1fd3c212a --- /dev/null +++ b/biology/py-valerius/pkg-descr @@ -0,0 +1,3 @@ +valerius is a simple Bioinformatics toolset for processing Biological sequences. + +It can gfetch sequences from servers, detect their types, do FASTA parsing.