git: 8feba41c4afa - main - science/py-arbor: New port: Multi-compartment neural network simulation library

The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=8feba41c4afa8d9ad4df7e10bb3992c79b32a03d

commit 8feba41c4afa8d9ad4df7e10bb3992c79b32a03d
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2022-11-27 10:11:32 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2022-11-27 10:12:21 +0000

    science/py-arbor: New port: Multi-compartment neural network simulation library
---
 science/Makefile                            |  1 +
 science/py-arbor/Makefile                   | 35 +++++++++++++++++++++++++++++
 science/py-arbor/distinfo                   |  3 +++
 science/py-arbor/files/patch-CMakeLists.txt | 28 +++++++++++++++++++++++
 science/py-arbor/pkg-descr                  |  3 +++
 science/py-arbor/pkg-plist                  |  3 +++
 6 files changed, 73 insertions(+)

diff --git a/science/Makefile b/science/Makefile
index c67e3684888c..e9d5ac65faf8 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -283,6 +283,7 @@
     SUBDIR += py-SimpleSpectral
     SUBDIR += py-abipy
     SUBDIR += py-access
+    SUBDIR += py-arbor
     SUBDIR += py-asap3
     SUBDIR += py-asdf
     SUBDIR += py-asdf-standard
diff --git a/science/py-arbor/Makefile b/science/py-arbor/Makefile
new file mode 100644
index 000000000000..567c01f16f9c
--- /dev/null
+++ b/science/py-arbor/Makefile
@@ -0,0 +1,35 @@
+PORTNAME=	arbor
+DISTVERSIONPREFIX=	v
+DISTVERSION=	0.8
+CATEGORIES=	science
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	yuri@FreeBSD.org
+COMMENT=	Multi-compartment neural network simulation library
+WWW=		https://arbor-sim.org/
+
+LICENSE=	BSD3CLAUSE
+LICENSE_FILE=	${WRKSRC}/../LICENSE
+
+BUILD_DEPENDS=	pybind11>0:devel/pybind11
+LIB_DEPENDS=	libarbor.so:science/arbor
+
+USES=		cmake compiler:c++17-lang localbase:ldflags python
+
+USE_GITHUB=	yes
+GH_ACCOUNT=	arbor-sim
+
+WRKSRC_SUBDIR=	python
+
+CMAKE_ARGS=	-DPython3_EXECUTABLE=${PYTHON_CMD} \
+		-DARB_PYTHON_LIB_PATH=${PYTHONPREFIX_SITELIBDIR}
+
+CXXFLAGS+=	-fPIC
+
+post-patch:
+	@${ECHO} ${DISTVERSION} > ${WRKSRC}/VERSION
+
+post-install:
+	@${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/arbor/_arbor${PYTHON_EXT_SUFFIX}.so
+
+.include <bsd.port.mk>
diff --git a/science/py-arbor/distinfo b/science/py-arbor/distinfo
new file mode 100644
index 000000000000..6a64e8f1e731
--- /dev/null
+++ b/science/py-arbor/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1669535366
+SHA256 (arbor-sim-arbor-v0.8_GH0.tar.gz) = ee6b2486b1142cf4412dddd1caece0926d1712b8d1868283e3bfe73e4ec2cb71
+SIZE (arbor-sim-arbor-v0.8_GH0.tar.gz) = 7794543
diff --git a/science/py-arbor/files/patch-CMakeLists.txt b/science/py-arbor/files/patch-CMakeLists.txt
new file mode 100644
index 000000000000..9441da10091c
--- /dev/null
+++ b/science/py-arbor/files/patch-CMakeLists.txt
@@ -0,0 +1,28 @@
+--- CMakeLists.txt.orig	2022-11-15 15:19:19 UTC
++++ CMakeLists.txt
+@@ -1,3 +1,7 @@
++cmake_minimum_required(VERSION 3.19)
++
++find_package(Python3 ${arb_py_version} COMPONENTS Interpreter Development REQUIRED)
++
+ include(GNUInstallDirs)
+ 
+ set(PYBIND11_CPP_STANDARD -std=c++17)
+@@ -79,14 +83,14 @@ if (ARB_WITH_MPI)
+ endif()
+ 
+ # For unit tests on C++ side of Python wrappers
+-add_subdirectory(test)
++#add_subdirectory(test)
+ 
+ # Create the Python module in the build directory.
+ # The module contains the dynamic library, __init__.py and VERSION information.
+ set(python_mod_path "${CMAKE_CURRENT_BINARY_DIR}/arbor")
+ set_target_properties(pyarb PROPERTIES LIBRARY_OUTPUT_DIRECTORY "${python_mod_path}")
+-file(COPY "${PROJECT_SOURCE_DIR}/python/__init__.py" DESTINATION "${python_mod_path}")
+-file(COPY "${PROJECT_SOURCE_DIR}/VERSION" DESTINATION "${python_mod_path}")
++file(COPY "${CMAKE_CURRENT_SOURCE_DIR}/__init__.py" DESTINATION "${python_mod_path}")
++file(COPY "${CMAKE_CURRENT_SOURCE_DIR}/VERSION" DESTINATION "${python_mod_path}")
+ 
+ # Set the installation path
+ 
diff --git a/science/py-arbor/pkg-descr b/science/py-arbor/pkg-descr
new file mode 100644
index 000000000000..6350b89f2e28
--- /dev/null
+++ b/science/py-arbor/pkg-descr
@@ -0,0 +1,3 @@
+Arbor is a multi-compartment neuron simulation library; compatible with
+next-generation accelerators; best-practices applied to research software;
+focussed on community-driven development.
diff --git a/science/py-arbor/pkg-plist b/science/py-arbor/pkg-plist
new file mode 100644
index 000000000000..c4ff5834b200
--- /dev/null
+++ b/science/py-arbor/pkg-plist
@@ -0,0 +1,3 @@
+%%PYTHON_SITELIBDIR%%/arbor/VERSION
+%%PYTHON_SITELIBDIR%%/arbor/__init__.py
+%%PYTHON_SITELIBDIR%%/arbor/_arbor%%PYTHON_EXT_SUFFIX%%.so