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ESMTPS id 4NDcRt5bJZzT47; Sat, 19 Nov 2022 02:05:14 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 2AJ25EPN082996; Sat, 19 Nov 2022 02:05:14 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 2AJ25EeR082995; Sat, 19 Nov 2022 02:05:14 GMT (envelope-from git) Date: Sat, 19 Nov 2022 02:05:14 GMT Message-Id: <202211190205.2AJ25EeR082995@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: fa8a770affb2 - main - science/InsightToolkit521: New port: Fork of science/InsightToolkit List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: fa8a770affb2e75206d2a6aef6bf4a554fc54995 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=fa8a770affb2e75206d2a6aef6bf4a554fc54995 commit fa8a770affb2e75206d2a6aef6bf4a554fc54995 Author: Yuri Victorovich AuthorDate: 2022-11-19 01:57:07 +0000 Commit: Yuri Victorovich CommitDate: 2022-11-19 02:05:10 +0000 science/InsightToolkit521: New port: Fork of science/InsightToolkit for graphics/elastix --- science/InsightToolkit521/Makefile | 74 + science/InsightToolkit521/Makefile.version | 3 + science/InsightToolkit521/distinfo | 5 + .../files/patch-CMake_ITKModuleTest.cmake | 10 + ...ules_ThirdParty_MINC_src_libminc_CMakeLists.txt | 34 + science/InsightToolkit521/pkg-descr | 8 + science/InsightToolkit521/pkg-plist | 4248 ++++++++++++++++++++ science/Makefile | 1 + 8 files changed, 4383 insertions(+) diff --git a/science/InsightToolkit521/Makefile b/science/InsightToolkit521/Makefile new file mode 100644 index 000000000000..12a2a906b343 --- /dev/null +++ b/science/InsightToolkit521/Makefile @@ -0,0 +1,74 @@ +PORTNAME= InsightToolkit +DISTVERSIONPREFIX= v +DISTVERSION= 5.2.1 +CATEGORIES= science biology +MASTER_SITES= https://github.com/InsightSoftwareConsortium/ITK/releases/download/v${DISTVERSION}/:data +PKGNAMESUFFIX= 521 +DISTFILES= InsightData-${DISTVERSION}.tar.gz:data + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Insight Toolkit +WWW= https://www.itk.org + +LICENSE= APACHE20 +LICENSE_FILE= ${WRKSRC}/LICENSE + +BUILD_DEPENDS= googletest>=0:devel/googletest +LIB_DEPENDS= libgdcmCommon.so:devel/gdcm \ + libexpat.so:textproc/expat2 \ + libfftw.so:math/fftw \ + libhdf5.so:science/hdf5 \ + libpng.so:graphics/png \ + libsz.so:science/libaec \ + libtiff.so:graphics/tiff + +USES= cmake:testing compiler:c++11-lang eigen:3 jpeg pkgconfig python:test +USE_LDCONFIG= ${PREFIX}/lib/InsightToolkit + +USE_GITHUB= yes +GH_ACCOUNT= InsightSoftwareConsortium +GH_PROJECT= ITK + +CMAKE_ON= BUILD_SHARED_LIBS \ + ITK_FORBID_DOWNLOADS \ + ITK_LEGACY_SILENT \ + ITK_USE_SYSTEM_EXPAT \ + ITK_USE_SYSTEM_FFTW \ + ITK_USE_SYSTEM_GDCM \ + ITK_USE_SYSTEM_HDF5 \ + ITK_USE_SYSTEM_JPEG \ + ITK_USE_SYSTEM_LIBRARIES \ + ITK_USE_SYSTEM_PNG \ + ITK_USE_SYSTEM_TIFF \ + ITK_USE_SYSTEM_ZLIB \ + Module_ITKIOMIC \ + Module_ITKIOTransformMINC \ + Module_ITKReview +CMAKE_ARGS= -DPython3_EXECUTABLE=${PYTHON_CMD} +CMAKE_OFF= ITK_USE_KWSTYLE BUILD_TESTING +CMAKE_TESTING_ON= BUILD_TESTING # 3 tests are known to fail, see https://github.com/InsightSoftwareConsortium/ITK/issues/3739 + +ITK_VER= ${PORTVERSION:R} + +PLIST_SUB+= ITK_VER=${ITK_VER} + +OPTIONS_DEFINE= EXAMPLES TESTING +EXAMPLES_DESC= Build examples (very time consuming) +TESTING_DESC= Build testing programs (very time consuming) + +EXAMPLES_CMAKE_BOOL= BUILD_EXAMPLES +TESTING_CMAKE_BOOL= BUILD_TESTING + +.include + +.if ${CHOSEN_COMPILER_TYPE} == gcc +PLIST_SUB+= CHOSEN_COMPILER_TYPE="GNU" +.else +PLIST_SUB+= CHOSEN_COMPILER_TYPE="Clang" +.endif + +post-extract: + ${MV} ${WRKDIR}/${PORTNAME}-${PORTVERSION}/.ExternalData/* ${WRKSRC}/.ExternalData/ + ${RM} -r ${WRKDIR}/${PORTNAME}-${PORTVERSION} + +.include diff --git a/science/InsightToolkit521/Makefile.version b/science/InsightToolkit521/Makefile.version new file mode 100644 index 000000000000..a6b042ca43a6 --- /dev/null +++ b/science/InsightToolkit521/Makefile.version @@ -0,0 +1,3 @@ +# this file is provided for ITK users + +ITK_VER=5.2 diff --git a/science/InsightToolkit521/distinfo b/science/InsightToolkit521/distinfo new file mode 100644 index 000000000000..08a01bbf5ca9 --- /dev/null +++ b/science/InsightToolkit521/distinfo @@ -0,0 +1,5 @@ +TIMESTAMP = 1668411091 +SHA256 (InsightData-5.2.1.tar.gz) = b5fcd209f456af289473ccc78f935b910168b852f3d4707d0c1e9dfd508b1757 +SIZE (InsightData-5.2.1.tar.gz) = 293448802 +SHA256 (InsightSoftwareConsortium-ITK-v5.2.1_GH0.tar.gz) = 6022b2b64624b8bcec3333fe48d5f74ff6ebceb3bdf98258ba7d7fbbc76b99ab +SIZE (InsightSoftwareConsortium-ITK-v5.2.1_GH0.tar.gz) = 20955613 diff --git a/science/InsightToolkit521/files/patch-CMake_ITKModuleTest.cmake b/science/InsightToolkit521/files/patch-CMake_ITKModuleTest.cmake new file mode 100644 index 000000000000..014ed3718758 --- /dev/null +++ b/science/InsightToolkit521/files/patch-CMake_ITKModuleTest.cmake @@ -0,0 +1,10 @@ +--- CMake/ITKModuleTest.cmake.orig 2019-08-03 09:25:42 UTC ++++ CMake/ITKModuleTest.cmake +@@ -244,6 +244,7 @@ endfunction() + + function(CreateGoogleTestDriver KIT KIT_LIBS KitTests) + set(exe "${KIT}GTestDriver") ++ find_package(GTest) + add_executable(${exe} ${KitTests} ) + target_link_libraries(${exe} ${KIT_LIBS} GTest::GTest GTest::Main) + itk_module_target_label(${exe}) diff --git a/science/InsightToolkit521/files/patch-Modules_ThirdParty_MINC_src_libminc_CMakeLists.txt b/science/InsightToolkit521/files/patch-Modules_ThirdParty_MINC_src_libminc_CMakeLists.txt new file mode 100644 index 000000000000..5dc81a69c8fc --- /dev/null +++ b/science/InsightToolkit521/files/patch-Modules_ThirdParty_MINC_src_libminc_CMakeLists.txt @@ -0,0 +1,34 @@ +--- Modules/ThirdParty/MINC/src/libminc/CMakeLists.txt.orig 2019-07-28 10:06:31 UTC ++++ Modules/ThirdParty/MINC/src/libminc/CMakeLists.txt +@@ -403,11 +403,11 @@ SET(LIBMINC_STATIC_LIBRARIES ${LIBMINC_LIBRARY_STATIC} + SET(LIBMINC_STATIC_LIBRARIES_CONFIG ${LIBMINC_LIBRARY_STATIC} ${HDF5_LIBRARY_NAME} ${NIFTI_LIBRARIES} ${ZLIB_LIBRARY_NAME}) + + IF(UNIX) +- SET(LIBMINC_LIBRARIES ${LIBMINC_LIBRARIES} m dl ${RT_LIBRARY}) +- SET(LIBMINC_STATIC_LIBRARIES ${LIBMINC_STATIC_LIBRARIES} m dl ${RT_LIBRARY}) ++ SET(LIBMINC_LIBRARIES ${LIBMINC_LIBRARIES} m ${CMAKE_DL_LIBS} ${RT_LIBRARY}) ++ SET(LIBMINC_STATIC_LIBRARIES ${LIBMINC_STATIC_LIBRARIES} m ${CMAKE_DL_LIBS} ${RT_LIBRARY}) + +- SET(LIBMINC_LIBRARIES_CONFIG ${LIBMINC_LIBRARIES_CONFIG} m dl ${RT_LIBRARY_NAME}) +- SET(LIBMINC_STATIC_LIBRARIES_CONFIG ${LIBMINC_STATIC_LIBRARIES_CONFIG} m dl ${RT_LIBRARY_NAME}) ++ SET(LIBMINC_LIBRARIES_CONFIG ${LIBMINC_LIBRARIES_CONFIG} m ${CMAKE_DL_LIBS} ${RT_LIBRARY_NAME}) ++ SET(LIBMINC_STATIC_LIBRARIES_CONFIG ${LIBMINC_STATIC_LIBRARIES_CONFIG} m ${CMAKE_DL_LIBS} ${RT_LIBRARY_NAME}) + ENDIF(UNIX) + + SET(minc_LIB_SRCS ${minc2_LIB_SRCS} ${minc_common_SRCS}) +@@ -447,13 +447,13 @@ ENDIF(NOT LIBMINC_USE_SYSTEM_NIFTI AND NOT LIBMINC_EX + #EXPORT(TARGETS ${LIBMINC_LIBRARY} FILE "${LIBMINC_EXPORTED_TARGETS}.cmake") + + IF(UNIX) +- TARGET_LINK_LIBRARIES(${LIBMINC_LIBRARY} m dl ) ++ TARGET_LINK_LIBRARIES(${LIBMINC_LIBRARY} m ${CMAKE_DL_LIBS} ) + + #ITK: Skip static library build + IF(0) + IF(LIBMINC_BUILD_SHARED_LIBS) + ADD_LIBRARY(${LIBMINC_LIBRARY_STATIC} STATIC ${minc_LIB_SRCS} ${minc_HEADERS} ${volume_io_LIB_SRCS} ${volume_io_HEADERS} ) +- TARGET_LINK_LIBRARIES(${LIBMINC_LIBRARY_STATIC} ${HDF5_LIBRARY} ${NIFTI_LIBRARIES} ${ZLIB_LIBRARY} ${RT_LIBRARY} m dl ) ++ TARGET_LINK_LIBRARIES(${LIBMINC_LIBRARY_STATIC} ${HDF5_LIBRARY} ${NIFTI_LIBRARIES} ${ZLIB_LIBRARY} ${RT_LIBRARY} m ${CMAKE_DL_LIBS} ) + IF(LIBMINC_MINC1_SUPPORT) + TARGET_LINK_LIBRARIES(${LIBMINC_LIBRARY} ${NETCDF_LIBRARY}) + ENDIF(LIBMINC_MINC1_SUPPORT) diff --git a/science/InsightToolkit521/pkg-descr b/science/InsightToolkit521/pkg-descr new file mode 100644 index 000000000000..f44d01713fcc --- /dev/null +++ b/science/InsightToolkit521/pkg-descr @@ -0,0 +1,8 @@ +ITK is an open-source software toolkit for performing registration and +segmentation. Segmentation is the process of identifying and classifying +data found in a digitally sampled representation. Typically the sampled +representation is an image acquired from such medical instrumentation as +CT or MRI scanners. Registration is the task of aligning or developing +correspondences between data. For example, in the medical environment, +a CT scan may be aligned with a MRI scan in order to combine the +information contained in both. diff --git a/science/InsightToolkit521/pkg-plist b/science/InsightToolkit521/pkg-plist new file mode 100644 index 000000000000..b5bb1687de8a --- /dev/null +++ b/science/InsightToolkit521/pkg-plist @@ -0,0 +1,4248 @@ +bin/itkTestDriver +include/ITK-%%ITK_VER%%/DICOMAppHelper.h +include/ITK-%%ITK_VER%%/DICOMBuffer.h +include/ITK-%%ITK_VER%%/DICOMCMakeConfig.h +include/ITK-%%ITK_VER%%/DICOMCallback.h +include/ITK-%%ITK_VER%%/DICOMConfig.h +include/ITK-%%ITK_VER%%/DICOMFile.h +include/ITK-%%ITK_VER%%/DICOMParser.h +include/ITK-%%ITK_VER%%/DICOMParserMap.h +include/ITK-%%ITK_VER%%/DICOMSource.h +include/ITK-%%ITK_VER%%/DICOMTypes.h +include/ITK-%%ITK_VER%%/ITKBiasCorrectionExport.h +include/ITK-%%ITK_VER%%/ITKColormapExport.h +include/ITK-%%ITK_VER%%/ITKCommonExport.h +include/ITK-%%ITK_VER%%/ITKConvolutionExport.h +include/ITK-%%ITK_VER%%/ITKDeformableMeshExport.h +include/ITK-%%ITK_VER%%/ITKDenoisingExport.h +include/ITK-%%ITK_VER%%/ITKDiffusionTensorImageExport.h +include/ITK-%%ITK_VER%%/ITKFFTExport.h +include/ITK-%%ITK_VER%%/ITKFastMarchingExport.h +include/ITK-%%ITK_VER%%/ITKIOBMPExport.h +include/ITK-%%ITK_VER%%/ITKIOBioRadExport.h +include/ITK-%%ITK_VER%%/ITKIOBrukerExport.h +include/ITK-%%ITK_VER%%/ITKIOCSVExport.h +include/ITK-%%ITK_VER%%/ITKIOGDCMExport.h +include/ITK-%%ITK_VER%%/ITKIOGEExport.h +include/ITK-%%ITK_VER%%/ITKIOGIPLExport.h +include/ITK-%%ITK_VER%%/ITKIOHDF5Export.h +include/ITK-%%ITK_VER%%/ITKIOIPLExport.h +include/ITK-%%ITK_VER%%/ITKIOImageBaseExport.h +include/ITK-%%ITK_VER%%/ITKIOJPEG2000Export.h +include/ITK-%%ITK_VER%%/ITKIOJPEGExport.h +include/ITK-%%ITK_VER%%/ITKIOLSMExport.h +include/ITK-%%ITK_VER%%/ITKIOMINCExport.h +include/ITK-%%ITK_VER%%/ITKIOMRCExport.h +include/ITK-%%ITK_VER%%/ITKIOMeshBYUExport.h +include/ITK-%%ITK_VER%%/ITKIOMeshBaseExport.h +include/ITK-%%ITK_VER%%/ITKIOMeshFreeSurferExport.h +include/ITK-%%ITK_VER%%/ITKIOMeshGiftiExport.h +include/ITK-%%ITK_VER%%/ITKIOMeshOBJExport.h +include/ITK-%%ITK_VER%%/ITKIOMeshOFFExport.h +include/ITK-%%ITK_VER%%/ITKIOMeshVTKExport.h +include/ITK-%%ITK_VER%%/ITKIOMetaExport.h +include/ITK-%%ITK_VER%%/ITKIONIFTIExport.h +include/ITK-%%ITK_VER%%/ITKIONRRDExport.h +include/ITK-%%ITK_VER%%/ITKIOPNGExport.h +include/ITK-%%ITK_VER%%/ITKIOSiemensExport.h +include/ITK-%%ITK_VER%%/ITKIOStimulateExport.h +include/ITK-%%ITK_VER%%/ITKIOTIFFExport.h +include/ITK-%%ITK_VER%%/ITKIOTransformBaseExport.h +include/ITK-%%ITK_VER%%/ITKIOTransformHDF5Export.h +include/ITK-%%ITK_VER%%/ITKIOTransformInsightLegacyExport.h +include/ITK-%%ITK_VER%%/ITKIOTransformMINCExport.h +include/ITK-%%ITK_VER%%/ITKIOTransformMatlabExport.h +include/ITK-%%ITK_VER%%/ITKIOVTKExport.h +include/ITK-%%ITK_VER%%/ITKIOXMLExport.h +include/ITK-%%ITK_VER%%/ITKImageFeatureExport.h +include/ITK-%%ITK_VER%%/ITKImageIntensityExport.h +include/ITK-%%ITK_VER%%/ITKKLMRegionGrowingExport.h +include/ITK-%%ITK_VER%%/ITKLabelMapExport.h +include/ITK-%%ITK_VER%%/ITKMarkovRandomFieldsClassifiersExport.h +include/ITK-%%ITK_VER%%/ITKMathematicalMorphologyExport.h +include/ITK-%%ITK_VER%%/ITKMeshExport.h +include/ITK-%%ITK_VER%%/ITKOptimizersExport.h +include/ITK-%%ITK_VER%%/ITKOptimizersv4Export.h +include/ITK-%%ITK_VER%%/ITKPDEDeformableRegistrationExport.h +include/ITK-%%ITK_VER%%/ITKPolynomialsExport.h +include/ITK-%%ITK_VER%%/ITKQuadEdgeMeshExport.h +include/ITK-%%ITK_VER%%/ITKQuadEdgeMeshFilteringExport.h +include/ITK-%%ITK_VER%%/ITKRegionGrowingExport.h +include/ITK-%%ITK_VER%%/ITKRegistrationMethodsv4Export.h +include/ITK-%%ITK_VER%%/ITKSmoothingExport.h +include/ITK-%%ITK_VER%%/ITKSpatialObjectsExport.h +include/ITK-%%ITK_VER%%/ITKStatisticsExport.h +include/ITK-%%ITK_VER%%/ITKTransformExport.h +include/ITK-%%ITK_VER%%/ITKVTKExport.h 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+include/ITK-%%ITK_VER%%/itkDomainThreader.h +include/ITK-%%ITK_VER%%/itkDomainThreader.hxx *** 3473 LINES SKIPPED ***