git: a875dde83e05 - main - biology/paml: Update to 4.10.6

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From: Joseph Mingrone <jrm_at_FreeBSD.org>
Date: Sun, 13 Nov 2022 02:37:11 UTC
The branch main has been updated by jrm:

URL: https://cgit.FreeBSD.org/ports/commit/?id=a875dde83e05c32752b096808e6b3ca50088a8a3

commit a875dde83e05c32752b096808e6b3ca50088a8a3
Author:     Joseph Mingrone <jrm@FreeBSD.org>
AuthorDate: 2022-11-13 02:35:29 +0000
Commit:     Joseph Mingrone <jrm@FreeBSD.org>
CommitDate: 2022-11-13 02:35:29 +0000

    biology/paml: Update to 4.10.6
    
    https://github.com/abacus-gene/paml/releases/tag/v4.10.6
    
    Sponsored by:   The FreeBSD Foundation
---
 biology/paml/Makefile  |  2 +-
 biology/paml/distinfo  |  6 +++---
 biology/paml/pkg-plist | 13 ++-----------
 3 files changed, 6 insertions(+), 15 deletions(-)

diff --git a/biology/paml/Makefile b/biology/paml/Makefile
index 7286939f9132..6a0b8081fd19 100644
--- a/biology/paml/Makefile
+++ b/biology/paml/Makefile
@@ -1,6 +1,6 @@
 PORTNAME=	paml
 DISTVERSIONPREFIX=	v
-DISTVERSION=	4.10.5
+DISTVERSION=	4.10.6
 CATEGORIES=	biology
 
 MAINTAINER=	jrm@FreeBSD.org
diff --git a/biology/paml/distinfo b/biology/paml/distinfo
index f52a021a50de..f597c10ced71 100644
--- a/biology/paml/distinfo
+++ b/biology/paml/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1661485713
-SHA256 (abacus-gene-paml-v4.10.5_GH0.tar.gz) = 1bb40ea7c976d961a4f46b76e950423f6f252d7060bc621cbf29c9743b88a063
-SIZE (abacus-gene-paml-v4.10.5_GH0.tar.gz) = 3393889
+TIMESTAMP = 1668305503
+SHA256 (abacus-gene-paml-v4.10.6_GH0.tar.gz) = d6437f04ee233209e1ded83addbfe65d1363185877a03ba7924ce81f9ebc7777
+SIZE (abacus-gene-paml-v4.10.6_GH0.tar.gz) = 3386016
diff --git a/biology/paml/pkg-plist b/biology/paml/pkg-plist
index 8ba55f7dfe03..aac062f86730 100644
--- a/biology/paml/pkg-plist
+++ b/biology/paml/pkg-plist
@@ -165,18 +165,9 @@ bin/yn00
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/mtCDNAape/mtCDNAape.trees
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/mtCDNAape/mtCDNAape.txt
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/mtprim9.nuc
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/myxo/codeml-M0.ctl
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/myxo/myxovirus.aln
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/myxo/myxovirus.tree
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/4s-ndata-maintree.trees
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/4s-ndata.trees
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/4s-ndata.txt
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/README.txt
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/baseml-ndata-maintree-ml.ctl
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/baseml-ndata-maintree.ctl
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/4s-mc.trees
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/4s-mc.txt
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/baseml-ndata.ctl
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/codeml-ndata-maintree-ml.ctl
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/codeml-ndata-maintree.ctl
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/codeml-ndata.ctl
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/pamp.ctl
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/paupblock