From nobody Mon May 23 02:05:44 2022 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id DD4861B4DCB9; Mon, 23 May 2022 02:05:45 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4L60zY08Z2z3MQq; Mon, 23 May 2022 02:05:45 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1653271545; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=d6wXfmDAgq9M8cjFvScfDKPIJZTxaDdBFiMCsNgrrn4=; b=R6sMzj1Rb64RBuQW1QKqsUf0awtJLGmhv8TaemYfBt6vTY5E6JsxoPs0A97Go4BQTbc88i wySmzOA31C3eK5NdfTZ3pWDLgllFj7gD0+L4UJadLKO5Kfxs6bFIy+UIseg47/LgucpV6V mXIvAtlTweW1EWLKy5aol/R2NPjkyrl2gK9NijTYHPLJBNHXe8sXBVFt8lYXeGLrbCGnLu 9fFRW67hSip0msPjDfYKFKPzRwWQhHIv8H7T91dkB+IYGb5Z0GyiQ6VIdw8MxoWWJJvkDT tXLLXxgiGdgsNUnL5WmI9A/JlrHb3M7doe9R5Y12LfRLpKq97ysHBgqJ3X32jw== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id BF6B926D70; Mon, 23 May 2022 02:05:44 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 24N25ieo064202; Mon, 23 May 2022 02:05:44 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 24N25iKi064201; Mon, 23 May 2022 02:05:44 GMT (envelope-from git) Date: Mon, 23 May 2022 02:05:44 GMT Message-Id: <202205230205.24N25iKi064201@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 64c437262d4e - main - biology/gatk: Update 4.2.6.0 -> 4.2.6.1 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 64c437262d4e175501de11a3e855431e8e08833b Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1653271545; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=d6wXfmDAgq9M8cjFvScfDKPIJZTxaDdBFiMCsNgrrn4=; b=hOO84aHXMf2UuCyy4D70Y2xk3+PIKGFq00QOk+vciKCNEcg+jj/6YwJUCIPNbTvPBiT7CF JyPG6QDkIxFs9tgLEs6KZMYTWEal1jUnjlFs4lJ8bQnAkErxSQSfIkZ0Sdw/MGvhKeV7RP boqxmujd/YvZbwBuNlxQmT0XAZUrw+2rxGNQrKstsYGtF+ZoqH5k3z6jmyGkmD/oK9y7dE Bo5OP37y0MK/B1di83If/gjeb9iZN0mFUbOpkaolzMSluGHkXZs9sFWDsbJHxzZuNkdnqB OnuH1MMd+yH1SpddRz3WcSO4GalPww4uOFnTC/BP+BfkkZmuJRJElxiX0qv7Kg== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1653271545; a=rsa-sha256; cv=none; b=BYS5U8kvgESI1VvyPOvpd+/OO5AhTEd8cfh5YnDyyz3AWND6keQi3DolCpjxkY53/bqSgP MBH1A4/LMXdo5ET1dm3A/pXDBc2y7+SI7EanJBSxZe15hxlj79vknfLUt1ZEoraabeDYZ7 t+oaFbyvoSIzI77a6yli3ecZ6lJsJfjTDNxnnO+eiHNtd2fvEiXx0BNkAtKACVa3OcH2f7 v9Nr9jEoF6h7nVW5Bsl4n5hyYTn6DcgxQfJ5SbA91s7HNEyWOvidlf+7MeW7k+sKySu2H4 pH2Q/pStQV9pP74i/Vqq0To90npjQgARCAAmBkG/Qvz60hsyVYUyU5T6737oFg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=64c437262d4e175501de11a3e855431e8e08833b commit 64c437262d4e175501de11a3e855431e8e08833b Author: Yuri Victorovich AuthorDate: 2022-05-23 02:04:54 +0000 Commit: Yuri Victorovich CommitDate: 2022-05-23 02:05:40 +0000 biology/gatk: Update 4.2.6.0 -> 4.2.6.1 --- biology/gatk/Makefile | 7 +++++-- biology/gatk/distinfo | 10 +++++----- 2 files changed, 10 insertions(+), 7 deletions(-) diff --git a/biology/gatk/Makefile b/biology/gatk/Makefile index 4c3a2bc0147f..9e4672363cc2 100644 --- a/biology/gatk/Makefile +++ b/biology/gatk/Makefile @@ -1,5 +1,5 @@ PORTNAME= gatk -DISTVERSION= 4.2.6.0 +DISTVERSION= 4.2.6.1 CATEGORIES= biology java EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} @@ -14,9 +14,12 @@ BROKEN_FreeBSD_12_powerpc64= fails to build: String index out of range: -1 BUILD_DEPENDS= gradle:devel/gradle USES= gettext-runtime +USE_JAVA= yes + +JAVA_VERSION= 12 # Java 8 fails on aarch64: Internal Error (assembler_aarch64.hpp:237), pid=76025, tid=0x000000000006e359 guarantee(val < (1U << nbits)) failed: Field too big for insn + USE_GITHUB= yes GH_ACCOUNT= broadinstitute -USE_JAVA= yes SUB_FILES= ${PORTNAME}.sh SUB_LIST= PORTVERSION=${PORTVERSION} JAVA=${JAVA} diff --git a/biology/gatk/distinfo b/biology/gatk/distinfo index 1aba6894ba0a..59042632fd71 100644 --- a/biology/gatk/distinfo +++ b/biology/gatk/distinfo @@ -1,5 +1,5 @@ -TIMESTAMP = 1649626976 -SHA256 (gatk-4.2.6.0-deps.tar.gz) = 8463fb40b969ef29b59663e222b00478aec5704be29ac166706457aa05cf5514 -SIZE (gatk-4.2.6.0-deps.tar.gz) = 545437623 -SHA256 (broadinstitute-gatk-4.2.6.0_GH0.tar.gz) = 6474111fd7686d06d9b6cb358c189739f15f8d720b5ce079fc0e3356e3e76bc2 -SIZE (broadinstitute-gatk-4.2.6.0_GH0.tar.gz) = 92541777 +TIMESTAMP = 1653271029 +SHA256 (gatk-4.2.6.1-deps.tar.gz) = 29c953f5e4ced2c06115d0f1ec8a501a5f17d0ed07337654249732680851c880 +SIZE (gatk-4.2.6.1-deps.tar.gz) = 545446960 +SHA256 (broadinstitute-gatk-4.2.6.1_GH0.tar.gz) = 248cefeaf3ea62ad672ff6402d82631e8b85a03d019c29bbb44d842f799dda67 +SIZE (broadinstitute-gatk-4.2.6.1_GH0.tar.gz) = 92503297