From nobody Mon Mar 21 20:40:23 2022 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id D3DED1A1441C; Mon, 21 Mar 2022 20:40:24 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4KMmhm1kMZz4kMj; Mon, 21 Mar 2022 20:40:24 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1647895224; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=ZZYAZMrEbBLpU6dsmsVx8wZ6rbHSvffWND8ew4mg1as=; b=LC2BFx1UPqcN2jL0BGvQBhG1+Xrmg3R1LKewX1i3zqJ19Nq/4eDD3/UA7zxIAU9OZJQeCv bJAw1gjwNLBLGcwiqJHaxJP2jidsKHpBUatLUFZOegwD4sTptzbYWfqSp932cmOP8+LFYJ ATDqM2Yt84RFmW3Il+9hbpFbwCMkylDdNNIRX/zUP/wvZZ/7nAQ/olbeBC4jU9M4ywh3UC KBXd87nSlaK1l5ZFl9uXR2lgpGiIm+N75F9ZJuP7LVGah8FekAs7+3oMEQnE/3rZslT2uf 6pCkDKPVKtcjrYWlHu/716GRXjCQSgEjwLO/Ldz8h++UyEEFx2arXLySaElGYw== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 15C7822262; Mon, 21 Mar 2022 20:40:24 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 22LKeNCQ003384; Mon, 21 Mar 2022 20:40:23 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 22LKeNLs003383; Mon, 21 Mar 2022 20:40:23 GMT (envelope-from git) Date: Mon, 21 Mar 2022 20:40:23 GMT Message-Id: <202203212040.22LKeNLs003383@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 950fb7be37a0 - main - biology/fastq-trim: Update to 0.1.1.2 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 950fb7be37a071f39e7ddad1dd4e10669635abb9 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1647895224; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=ZZYAZMrEbBLpU6dsmsVx8wZ6rbHSvffWND8ew4mg1as=; b=suzh26gvK5Tr1zoii4qdWOexvmONtWOPOyPDDxNoI5JuE9tBfg39DMOMVUdJy+BZ3b5r75 Igq985cfBXimpy/2adhe3rQcAXtoOrXvcfr5Va6FDs56OqEV1KyT2/oOCVqF9JjCpYlnNw l5p0zD7DFmhZzUET/XPBQrLqYZxA21odHEqzdCFFRLyndudEXYdoPvkQBpE+m9jQf0sM+Z Uu7zcmrIiMA+o8QwPRGLPXLqRK9A4EXLxyV2GfejUKpm7hpLWLLwgr5iIZRWUNRNwmUTXv iHfSu+OlZTfKt3aYRqYGnWUF/5eIJoRqR97P4KTopQZTq+RhojW1CDSxGwD1hg== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1647895224; a=rsa-sha256; cv=none; b=sqYzrBTKnFSl3R/87032AvxiR1Bs54KLhrh9YyMcvHkG9oCmBD/+bDaVj8OU19AozifvHB vWOjryhtZ6Z35x7B2KPY1vtk/ezWuH+nV2XcmBi24SPXJq+Hk1anOywJ4QwoqXCTXr3+gq OHyfZhKCfSdcRZaNX5qD0u2mO4kDikrzHSyD5/da9LtL+bsnbCAjeSGrcDeYteWAR7uDWL btq9pM90X4lN3iNlOQagrU9NyxiXP0N9XTzGcKUw0djsxSiK3AodmT3YGSEqNEqTb66EqR kjMmixJ1O3H0MLBqBugNfPyOu+kvgUExsp/8SLpUaXuIjLsBDnXBpeNb7XjEKw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=950fb7be37a071f39e7ddad1dd4e10669635abb9 commit 950fb7be37a071f39e7ddad1dd4e10669635abb9 Author: Jason W. Bacon AuthorDate: 2022-03-21 20:37:43 +0000 Commit: Jason W. Bacon CommitDate: 2022-03-21 20:37:43 +0000 biology/fastq-trim: Update to 0.1.1.2 Replace crash with run with no arguments with help msg fastq-vis -> fastq-scum (better name for contamination viewer) --- biology/fastq-trim/Makefile | 3 ++- biology/fastq-trim/distinfo | 6 +++--- biology/fastq-trim/pkg-descr | 4 ++-- biology/fastq-trim/pkg-plist | 2 +- 4 files changed, 8 insertions(+), 7 deletions(-) diff --git a/biology/fastq-trim/Makefile b/biology/fastq-trim/Makefile index 7b10097826ba..780b23489ee4 100644 --- a/biology/fastq-trim/Makefile +++ b/biology/fastq-trim/Makefile @@ -1,5 +1,6 @@ PORTNAME= fastq-trim -DISTVERSION= 0.1.1 +DISTVERSION= 0.1.1-2 +DISTVERSIONSUFFIX= -g4f6e2c2 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/fastq-trim/distinfo b/biology/fastq-trim/distinfo index 8b2366479432..7d078758ccd3 100644 --- a/biology/fastq-trim/distinfo +++ b/biology/fastq-trim/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1647691961 -SHA256 (outpaddling-fastq-trim-0.1.1_GH0.tar.gz) = ce959484b823f20a5e6e3c493490e71183865d15b6023ee7dc3a5822cc6b176c -SIZE (outpaddling-fastq-trim-0.1.1_GH0.tar.gz) = 30087 +TIMESTAMP = 1647885695 +SHA256 (outpaddling-fastq-trim-0.1.1-2-g4f6e2c2_GH0.tar.gz) = d7caca777c2a729941ed0f4757dde4ac989b129dd39c1c056a8cd33a62370018 +SIZE (outpaddling-fastq-trim-0.1.1-2-g4f6e2c2_GH0.tar.gz) = 30069 diff --git a/biology/fastq-trim/pkg-descr b/biology/fastq-trim/pkg-descr index e3ec0de0561a..1a0daef68185 100644 --- a/biology/fastq-trim/pkg-descr +++ b/biology/fastq-trim/pkg-descr @@ -1,4 +1,4 @@ -Fastq-trim is a hopefully lightening fast read trimming tool for QA of -DNA and RNA reads prior to analyses such as RNA-Seq. +Fastq-trim is a lightening fast read trimming tool for QA of DNA and RNA +reads prior to analyses such as RNA-Seq. WWW: https://github.com/outpaddling/Fastq-trim diff --git a/biology/fastq-trim/pkg-plist b/biology/fastq-trim/pkg-plist index 4c55bfdd58f8..e6b5028050cc 100644 --- a/biology/fastq-trim/pkg-plist +++ b/biology/fastq-trim/pkg-plist @@ -1,5 +1,5 @@ +bin/fastq-scum bin/fastq-trim -bin/fastq-vis include/fastq-trim-accessors.h include/fastq-trim-mutators.h include/fastq-trim-rvs.h