git: 328ae4074233 - main - */*: Replace science/szip with science/libaec
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Date: Thu, 16 Jun 2022 15:14:11 UTC
The branch main has been updated by sunpoet:
URL: https://cgit.FreeBSD.org/ports/commit/?id=328ae4074233a5b85e0e38efece1af5dcc218160
commit 328ae4074233a5b85e0e38efece1af5dcc218160
Author: Po-Chuan Hsieh <sunpoet@FreeBSD.org>
AuthorDate: 2022-06-16 15:06:54 +0000
Commit: Po-Chuan Hsieh <sunpoet@FreeBSD.org>
CommitDate: 2022-06-16 15:13:01 +0000
*/*: Replace science/szip with science/libaec
- Bump PORTREVISION of dependent ports for dependency change
szip does not allow redistribution in binary form without proper commercial
license. Its LICENSE_PERMS should be set to no-auto-accept which blocks building
this port, therefore building dependent ports are also blocked. Switch all
dependent ports to science/libaec to avoid conflicts and license issue.
PR: 228743, 246097, 250165
---
astro/oskar/Makefile | 3 ++-
audio/csound/Makefile | 4 ++--
biology/kallisto/Makefile | 3 ++-
cad/appcsxcad/Makefile | 3 ++-
cad/csxcad/Makefile | 4 ++--
cad/gmsh/Makefile | 3 ++-
graphics/alembic/Makefile | 3 ++-
graphics/qgis-ltr/Makefile | 3 ++-
graphics/qgis/Makefile | 3 ++-
graphics/vigra/Makefile | 4 ++--
graphics/vv/Makefile | 4 ++--
math/ambit/Makefile | 3 ++-
math/armadillo/Makefile | 3 ++-
math/flann/Makefile | 3 ++-
math/freefem++/Makefile | 3 ++-
math/labplot/Makefile | 4 ++--
math/mathgl/Makefile | 4 ++--
math/mdal/Makefile | 3 ++-
math/openturns/Makefile | 4 ++--
math/pdal/Makefile | 4 ++--
math/saga/Makefile | 3 ++-
misc/adios2/Makefile | 3 ++-
science/ALPSCore/Makefile | 4 ++--
science/InsightToolkit/Makefile | 4 ++--
science/abinit/Makefile | 4 ++--
science/ascent/Makefile | 3 ++-
science/avogadrolibs/Makefile | 3 ++-
science/axom/Makefile | 3 ++-
science/cdo/Makefile | 3 ++-
science/cgnslib/Makefile | 4 +++-
science/cgribex/Makefile | 4 ++--
science/chemps2/Makefile | 3 ++-
science/chrono/Makefile | 4 ++--
science/conduit/Makefile | 3 ++-
science/dakota/Makefile | 4 ++--
science/dynare/Makefile | 3 ++-
science/erkale/Makefile | 3 ++-
science/gnudatalanguage/Makefile | 4 ++--
science/hdf/Makefile | 3 ++-
science/hdf5-18/Makefile | 4 ++--
science/hdf5/Makefile | 3 ++-
science/helfem/Makefile | 4 ++--
science/lammps/Makefile | 3 ++-
science/netcdf/Makefile | 3 ++-
science/openems/Makefile | 4 ++--
science/openmc/Makefile | 3 ++-
science/openmolcas/Makefile | 3 ++-
science/py-PyNE/Makefile | 4 ++--
science/qmcpack/Makefile | 4 ++--
science/rmf/Makefile | 4 ++--
science/votca/Makefile | 4 ++--
sysutils/slurm-wlm/Makefile | 3 ++-
52 files changed, 105 insertions(+), 74 deletions(-)
diff --git a/astro/oskar/Makefile b/astro/oskar/Makefile
index a3b2bd69c1b8..f34faf9bc5a2 100644
--- a/astro/oskar/Makefile
+++ b/astro/oskar/Makefile
@@ -1,5 +1,6 @@
PORTNAME= OSKAR
DISTVERSION= 2.8.3
+PORTREVISION= 1
CATEGORIES= astro
MAINTAINER= yuri@FreeBSD.org
@@ -14,7 +15,7 @@ BROKEN_FreeBSD_12_powerpc64= fails to compile: oskar_convert_cirs_relative_direc
LIB_DEPENDS= libcfitsio.so:astro/cfitsio \
libhdf5.so:science/hdf5 \
- libsz.so:science/szip
+ libsz.so:science/libaec
USES= cmake compiler:c++11-lang localbase:ldflags python qt:5 \
shebangfix
diff --git a/audio/csound/Makefile b/audio/csound/Makefile
index d4770a67ff9d..4943b200d680 100644
--- a/audio/csound/Makefile
+++ b/audio/csound/Makefile
@@ -2,7 +2,7 @@
PORTNAME= csound
DISTVERSION= 6.15.0
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= audio lang
MAINTAINER= yuri@FreeBSD.org
@@ -91,7 +91,7 @@ FLUIDSYNTH_BROKEN= FluidSynth 2.x is broken upstream: https://github.com/csound/
HDF5_DESC= Build HDF5 read/write plugin
HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 \
- libsz.so:science/szip
+ libsz.so:science/libaec
HDF5_CMAKE_BOOL= BUILD_HDF5_OPCODES
JACK_DESC= Build the JACK related opcodes
diff --git a/biology/kallisto/Makefile b/biology/kallisto/Makefile
index 3d4aecd0b9d3..d28827b7ee2a 100644
--- a/biology/kallisto/Makefile
+++ b/biology/kallisto/Makefile
@@ -1,6 +1,7 @@
PORTNAME= kallisto
DISTVERSIONPREFIX= v
DISTVERSION= 0.48.0
+PORTREVISION= 1
PORTEPOCH= 1
CATEGORIES= biology
@@ -12,7 +13,7 @@ LICENSE_FILE= ${WRKSRC}/license.txt
BUILD_DEPENDS= autoconf>=0:devel/autoconf
LIB_DEPENDS= libhdf5.so:science/hdf5 \
- libsz.so:science/szip \
+ libsz.so:science/libaec \
libhts.so:biology/htslib
USES= cmake:noninja compiler:c++11-lang gmake localbase:ldflags
diff --git a/cad/appcsxcad/Makefile b/cad/appcsxcad/Makefile
index bd3f82a76564..221694424c61 100644
--- a/cad/appcsxcad/Makefile
+++ b/cad/appcsxcad/Makefile
@@ -1,6 +1,7 @@
PORTNAME= appcsxcad
DISTVERSIONPREFIX= v
DISTVERSION= 0.2.2-7
+PORTREVISION= 1
DISTVERSIONSUFFIX= -gde8c271
CATEGORIES= cad
@@ -18,7 +19,7 @@ LIB_DEPENDS= \
libhdf5.so:science/hdf5 \
libpng16.so:graphics/png \
libQCSXCAD.so:cad/qcsxcad \
- libsz.so:science/szip \
+ libsz.so:science/libaec \
libtiff.so:graphics/tiff \
libvtkCommonCore-8.2.so:math/vtk8 # some related packages don't support vtk9 yet, see https://github.com/thliebig/QCSXCAD/issues/6#issuecomment-901633240
diff --git a/cad/csxcad/Makefile b/cad/csxcad/Makefile
index debd9eb8558d..a7ddeae89644 100644
--- a/cad/csxcad/Makefile
+++ b/cad/csxcad/Makefile
@@ -2,7 +2,7 @@ PORTNAME= csxcad
DISTVERSIONPREFIX= v
DISTVERSION= 0.6.2-103
DISTVERSIONSUFFIX= -g3c4fb66
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= cad
MAINTAINER= yuri@FreeBSD.org
@@ -19,7 +19,7 @@ LIB_DEPENDS= libboost_system.so:devel/boost-libs \
libhdf5.so:science/hdf5 \
libmpfr.so:math/mpfr \
libpng16.so:graphics/png \
- libsz.so:science/szip \
+ libsz.so:science/libaec \
libtiff.so:graphics/tiff \
libtinyxml.so:textproc/tinyxml \
libvtkCommonCore-8.2.so:math/vtk8 # some related packages don't support vtk9 yet, see https://github.com/thliebig/QCSXCAD/issues/6#issuecomment-901633240
diff --git a/cad/gmsh/Makefile b/cad/gmsh/Makefile
index d1265eb03ca4..2370e67e0376 100644
--- a/cad/gmsh/Makefile
+++ b/cad/gmsh/Makefile
@@ -2,6 +2,7 @@
PORTNAME= gmsh
DISTVERSION= 4.9.2
+PORTREVISION= 1
CATEGORIES= cad
MASTER_SITES= http://gmsh.info/src/
DISTNAME= ${PORTNAME}-${PORTVERSION}-source
@@ -18,7 +19,7 @@ LIB_DEPENDS= libfltk.so:x11-toolkits/fltk \
libgmp.so:math/gmp \
libhdf5.so:science/hdf5 \
libpng.so:graphics/png \
- libsz.so:science/szip \
+ libsz.so:science/libaec \
libfreetype.so:print/freetype2
RUN_DEPENDS= getdp:science/getdp
diff --git a/graphics/alembic/Makefile b/graphics/alembic/Makefile
index 95de2628970b..cd15e5bf8f69 100644
--- a/graphics/alembic/Makefile
+++ b/graphics/alembic/Makefile
@@ -2,6 +2,7 @@
PORTNAME= alembic
PORTVERSION= 1.8.3
+PORTREVISION= 1
CATEGORIES= graphics
MAINTAINER= danfe@FreeBSD.org
@@ -10,7 +11,7 @@ COMMENT= Open framework for storing and sharing graphic scene data
LICENSE= BSD3CLAUSE
LIB_DEPENDS= libImath.so:math/Imath
-LIB_DEPENDS+= libsz.so:science/szip
+LIB_DEPENDS+= libsz.so:science/libaec
USES= cmake compiler:c++11-lang
USE_CXXSTD= c++11
diff --git a/graphics/qgis-ltr/Makefile b/graphics/qgis-ltr/Makefile
index e6c10ac207c7..74e795553ccf 100644
--- a/graphics/qgis-ltr/Makefile
+++ b/graphics/qgis-ltr/Makefile
@@ -2,6 +2,7 @@
PORTNAME= qgis
DISTVERSION= 3.22.7
+PORTREVISION= 1
CATEGORIES= graphics geography
MASTER_SITES= https://qgis.org/downloads/
PKGNAMESUFFIX= -ltr
@@ -52,7 +53,7 @@ LIB_DEPENDS= libexiv2.so:graphics/exiv2 \
libqwt6.so:x11-toolkits/qwt6 \
libspatialindex.so:devel/spatialindex \
libspatialite.so:databases/spatialite \
- libsz.so:science/szip \
+ libsz.so:science/libaec \
libxerces-c.so:textproc/xerces-c3 \
libzip.so:archivers/libzip \
libzstd.so:archivers/zstd
diff --git a/graphics/qgis/Makefile b/graphics/qgis/Makefile
index f7ba01ac3f65..a84b4d0407ad 100644
--- a/graphics/qgis/Makefile
+++ b/graphics/qgis/Makefile
@@ -2,6 +2,7 @@
PORTNAME= qgis
DISTVERSION= 3.24.3
+PORTREVISION= 1
CATEGORIES= graphics geography
MASTER_SITES= https://qgis.org/downloads/
@@ -51,7 +52,7 @@ LIB_DEPENDS= libexiv2.so:graphics/exiv2 \
libqwt6.so:x11-toolkits/qwt6 \
libspatialindex.so:devel/spatialindex \
libspatialite.so:databases/spatialite \
- libsz.so:science/szip \
+ libsz.so:science/libaec \
libxerces-c.so:textproc/xerces-c3 \
libzip.so:archivers/libzip \
libzstd.so:archivers/zstd
diff --git a/graphics/vigra/Makefile b/graphics/vigra/Makefile
index 8199e7f767ed..b0c6be34fec8 100644
--- a/graphics/vigra/Makefile
+++ b/graphics/vigra/Makefile
@@ -3,7 +3,7 @@
PORTNAME= vigra
DISTVERSIONPREFIX=v
DISTVERSION= 1.11.1
-PORTREVISION= 20
+PORTREVISION= 21
CATEGORIES= graphics
MAINTAINER= ports@FreeBSD.org
@@ -13,7 +13,7 @@ LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/LICENSE.txt
LIB_DEPENDS= libImath.so:math/Imath \
- libsz.so:science/szip
+ libsz.so:science/libaec
USES= cmake compiler:c++14-lang python:run shebangfix
USE_GITHUB= yes
diff --git a/graphics/vv/Makefile b/graphics/vv/Makefile
index ff8f75db3ed0..498d345b932c 100644
--- a/graphics/vv/Makefile
+++ b/graphics/vv/Makefile
@@ -2,7 +2,7 @@ PORTNAME= vv
DISTVERSIONPREFIX= v
DISTVERSION= 1.4.0-383
DISTVERSIONSUFFIX= -g7a783a8b
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= graphics
MAINTAINER= yuri@FreeBSD.org
@@ -18,7 +18,7 @@ LIB_DEPENDS= libexpat.so:textproc/expat2 \
libhdf5_cpp.so:science/hdf5 \
libITKLabelMap-5.0.so:science/InsightToolkit \
libpng.so:graphics/png \
- libsz.so:science/szip \
+ libsz.so:science/libaec \
libtiff.so:graphics/tiff \
libvtkIOSQL-8.2.so:math/vtk8
diff --git a/math/ambit/Makefile b/math/ambit/Makefile
index 8a5940ccc07a..f596c0e5f59d 100644
--- a/math/ambit/Makefile
+++ b/math/ambit/Makefile
@@ -1,6 +1,7 @@
PORTNAME= ambit
DISTVERSIONPREFIX= v
DISTVERSION= 0.6
+PORTREVISION= 1
CATEGORIES= math
PKGNAMESUFFIX= -tensor # avoid clash with shells/ambit
@@ -12,7 +13,7 @@ LICENSE_FILE= ${WRKSRC}/COPYING
LIB_DEPENDS= libhdf5.so:science/hdf5 \
libopenblas.so:math/openblas \
- libsz.so:science/szip
+ libsz.so:science/libaec
USES= cmake:testing compiler:c++11-lang python:build
USE_LDCONFIG= yes
diff --git a/math/armadillo/Makefile b/math/armadillo/Makefile
index d44c4169d02b..3678da6576f0 100644
--- a/math/armadillo/Makefile
+++ b/math/armadillo/Makefile
@@ -1,5 +1,6 @@
PORTNAME= armadillo
PORTVERSION= 11.2.0
+PORTREVISION= 1
CATEGORIES= math
MASTER_SITES= SF/arma
@@ -14,7 +15,7 @@ LIB_DEPENDS= libarpack.so:math/arpack-ng \
libhdf5.so:science/hdf5 \
liblapack.so:math/lapack \
libsuperlu.so:math/superlu \
- libsz.so:science/szip
+ libsz.so:science/libaec
USES= blaslapack:openblas cmake compiler:c++11-lang pkgconfig tar:xz
diff --git a/math/flann/Makefile b/math/flann/Makefile
index 8de1262028ac..30114a68bcb3 100644
--- a/math/flann/Makefile
+++ b/math/flann/Makefile
@@ -1,5 +1,6 @@
PORTNAME= flann
DISTVERSION= 1.9.2
+PORTREVISION= 1
CATEGORIES= math
MAINTAINER= yuri@FreeBSD.org
@@ -10,7 +11,7 @@ LICENSE_FILE= ${WRKSRC}/COPYING
LIB_DEPENDS= libhdf5.so:science/hdf5 \
liblz4.so:archivers/liblz4 \
- libsz.so:science/szip
+ libsz.so:science/libaec
USES= cmake compiler:c++11-lang localbase:ldflags pkgconfig
USE_LDCONFIG= yes
diff --git a/math/freefem++/Makefile b/math/freefem++/Makefile
index 1327f4483769..87c8007a9ac2 100644
--- a/math/freefem++/Makefile
+++ b/math/freefem++/Makefile
@@ -3,6 +3,7 @@
PORTNAME= freefem++
DISTVERSIONPREFIX= v
DISTVERSION= 4.11
+PORTREVISION= 1
CATEGORIES= math science
MAINTAINER= yuri@FreeBSD.org
@@ -28,7 +29,7 @@ LIB_DEPENDS= libhdf5.so:science/hdf5 \
libcmumps.so:math/mumps \
libnlopt.so:math/nlopt \
libsuperlu.so:math/superlu \
- libsz.so:science/szip
+ libsz.so:science/libaec
RUN_DEPENDS= bash:shells/bash \
pipe:misc/pipe
diff --git a/math/labplot/Makefile b/math/labplot/Makefile
index a37a37fdaf09..67eea7aa4932 100644
--- a/math/labplot/Makefile
+++ b/math/labplot/Makefile
@@ -2,7 +2,7 @@
PORTNAME= labplot
DISTVERSION= 2.8.2
-PORTREVISION= 16
+PORTREVISION= 17
CATEGORIES= math kde
MASTER_SITES= KDE/stable/${PORTNAME}/${PORTVERSION}
@@ -19,7 +19,7 @@ LICENSE_FILE= ${WRKSRC}/COPYING
LIB_DEPENDS= libgsl.so:math/gsl \
liblz4.so:archivers/liblz4 \
libspectre.so:print/libspectre \
- libsz.so:science/szip
+ libsz.so:science/libaec
USES= bison cmake compiler:c++11-lang desktop-file-utils kde:5 qt:5 \
shared-mime-info tar:xz
diff --git a/math/mathgl/Makefile b/math/mathgl/Makefile
index 79d0992bae49..c58a726f7c2c 100644
--- a/math/mathgl/Makefile
+++ b/math/mathgl/Makefile
@@ -1,6 +1,6 @@
PORTNAME= mathgl
DISTVERSION= 2.5
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= math graphics
MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/${PORTNAME}%20${PORTVERSION}/
@@ -16,7 +16,7 @@ LIB_DEPENDS= libgif.so:graphics/giflib \
libhpdf.so:print/libharu \
libltdl.so:devel/libltdl \
libpng.so:graphics/png \
- libsz.so:science/szip
+ libsz.so:science/libaec
USES= cmake compiler:c++11-lang gettext-runtime gl jpeg xorg
USE_GL= gl glu glut
diff --git a/math/mdal/Makefile b/math/mdal/Makefile
index 9b46205fb112..c6580aa2614a 100644
--- a/math/mdal/Makefile
+++ b/math/mdal/Makefile
@@ -2,6 +2,7 @@
PORTNAME= mdal
DISTVERSION= 0.9.4
+PORTREVISION= 1
CATEGORIES= math geography
MAINTAINER= wen@FreeBSD.org
@@ -16,7 +17,7 @@ LIB_DEPENDS= libpdal_base.so:math/pdal \
libsqlite3.so:databases/sqlite3 \
libgdal.so:graphics/gdal \
libhdf5.so:science/hdf5 \
- libsz.so:science/szip
+ libsz.so:science/libaec
USES= cmake gnome localbase
USE_GNOME= libxml2
diff --git a/math/openturns/Makefile b/math/openturns/Makefile
index e4615c26d033..b2c071adb738 100644
--- a/math/openturns/Makefile
+++ b/math/openturns/Makefile
@@ -1,7 +1,7 @@
PORTNAME= openturns
DISTVERSIONPREFIX= v
DISTVERSION= 1.19
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= math
MAINTAINER= yuri@FreeBSD.org
@@ -48,7 +48,7 @@ LIB_DEPENDS= libamd.so:math/suitesparse-amd \
libprimesieve.so:math/primesieve \
libspqr.so:math/suitesparse-spqr \
libsuitesparseconfig.so:math/suitesparse-config \
- libsz.so:science/szip \
+ libsz.so:science/libaec \
libtbb.so:devel/onetbb \
libunwind.so:devel/libunwind
diff --git a/math/pdal/Makefile b/math/pdal/Makefile
index d9760708c942..d37f817a5ac4 100644
--- a/math/pdal/Makefile
+++ b/math/pdal/Makefile
@@ -2,7 +2,7 @@
PORTNAME= pdal
DISTVERSION= 2.3.0
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= math databases graphics
MASTER_SITES= https://github.com/PDAL/PDAL/releases/download/${DISTVERSION}/
DISTNAME= ${PORTNAME}-${DISTVERSION}-src
@@ -59,7 +59,7 @@ BASH_RUN_DEPENDS= bash:shells/bash
ICEBRIDGE_CMAKE_BOOL= BUILD_PLUGIN_ICEBRIDGE
ICEBRIDGE_LIB_DEPENDS= libhdf5.so:science/hdf5 \
- libsz.so:science/szip
+ libsz.so:science/libaec
LAZPERF_CMAKE_BOOL= WITH_LAZPERF
LAZPERF_LIB_DEPENDS= liblazperf.so:archivers/lazperf
diff --git a/math/saga/Makefile b/math/saga/Makefile
index 0b1ddf09b913..c124604fbc06 100644
--- a/math/saga/Makefile
+++ b/math/saga/Makefile
@@ -2,6 +2,7 @@
PORTNAME= saga
PORTVERSION= 8.2.2
+PORTREVISION= 1
CATEGORIES= math
MASTER_SITES= SF/saga-gis/SAGA%20-%20${PORTVERSION:C/\.[[:digit:]]\.[[:digit:]]*$//}/SAGA%20-%20${PORTVERSION}
@@ -25,7 +26,7 @@ LIB_DEPENDS= libcurl.so:ftp/curl \
libproj.so:graphics/proj \
libqhull_r.so:math/qhull \
libsvm.so:science/libsvm \
- libsz.so:science/szip \
+ libsz.so:science/libaec \
libtiff.so:graphics/tiff
RUN_DEPENDS:= swig:devel/swig
diff --git a/misc/adios2/Makefile b/misc/adios2/Makefile
index 9887fabbd772..f4826ef0583a 100644
--- a/misc/adios2/Makefile
+++ b/misc/adios2/Makefile
@@ -1,6 +1,7 @@
PORTNAME= adios2
DISTVERSIONPREFIX= v
DISTVERSION= 2.8.1
+PORTREVISION= 1
CATEGORIES= misc science
MAINTAINER= yuri@FreeBSD.org
@@ -26,7 +27,7 @@ LIB_DEPENDS= libblosc.so:archivers/c-blosc \
libmpi.so:net/mpich \
libpng.so:graphics/png \
libsodium.so:security/libsodium \
- libsz.so:science/szip \
+ libsz.so:science/libaec \
libzmq.so:net/libzmq4 \
libzfp.so:devel/zfp
RUN_DEPENDS= bash:shells/bash \
diff --git a/science/ALPSCore/Makefile b/science/ALPSCore/Makefile
index d4460f92ffd2..d6992a62de5d 100644
--- a/science/ALPSCore/Makefile
+++ b/science/ALPSCore/Makefile
@@ -1,7 +1,7 @@
PORTNAME= ALPSCore
DISTVERSIONPREFIX= v
DISTVERSION= 2.2.0
-PORTREVISION= 14
+PORTREVISION= 15
CATEGORIES= science
MAINTAINER= ports@FreeBSD.org
@@ -14,7 +14,7 @@ BROKEN_i386= fails to build: no matching member function for call to 'read'
LIB_DEPENDS= libboost_system.so:devel/boost-libs \
libhdf5.so:science/hdf5 \
- libsz.so:science/szip
+ libsz.so:science/libaec
USES= cmake compiler:c++11-lang eigen:3
USE_GITHUB= yes
diff --git a/science/InsightToolkit/Makefile b/science/InsightToolkit/Makefile
index 189e1931d920..419af12711c5 100644
--- a/science/InsightToolkit/Makefile
+++ b/science/InsightToolkit/Makefile
@@ -3,7 +3,7 @@
PORTNAME= InsightToolkit
PORTVERSION= 5.0.1
DISTVERSIONPREFIX=v
-PORTREVISION= 7
+PORTREVISION= 8
CATEGORIES= science biology
MASTER_SITES= https://github.com/InsightSoftwareConsortium/ITK/releases/download/v5.0.1/:data
DISTFILES= InsightData-5.0.1.tar.gz:data
@@ -19,7 +19,7 @@ LIB_DEPENDS= libgdcmCommon.so:devel/gdcm \
libfftw.so:math/fftw \
libhdf5.so:science/hdf5 \
libpng.so:graphics/png \
- libsz.so:science/szip \
+ libsz.so:science/libaec \
libtiff.so:graphics/tiff
USES= cmake compiler:c++11-lang eigen:3 jpeg pkgconfig
diff --git a/science/abinit/Makefile b/science/abinit/Makefile
index 96b74303b2c3..49a68b01c2e0 100644
--- a/science/abinit/Makefile
+++ b/science/abinit/Makefile
@@ -2,7 +2,7 @@
PORTNAME= abinit
DISTVERSION= 9.4.2
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
@@ -19,7 +19,7 @@ BUILD_DEPENDS= gm4:devel/m4 \
${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}graphviz>0:graphics/py-graphviz@${PY_FLAVOR}
LIB_DEPENDS= libelpa.so:math/elpa \
- libsz.so:science/szip \
+ libsz.so:science/libaec \
libelpa.so:math/elpa \
libxc.so:science/libxc \
libfftw3.so:math/fftw3 \
diff --git a/science/ascent/Makefile b/science/ascent/Makefile
index 65aeca47aeb2..77b6b2a0042f 100644
--- a/science/ascent/Makefile
+++ b/science/ascent/Makefile
@@ -1,6 +1,7 @@
PORTNAME= ascent
DISTVERSIONPREFIX= v
DISTVERSION= 0.8.0
+PORTREVISION= 1
CATEGORIES= science
PKGNAMESUFFIX= -visualizer
@@ -14,7 +15,7 @@ LIB_DEPENDS= libconduit.so:science/conduit \
libhdf5.so:science/hdf5 \
libsiloh5.so:science/silo \
libsysinfo.so:devel/libsysinfo \
- libsz.so:science/szip
+ libsz.so:science/libaec
USES= cmake:testing compiler:c++11-lang fortran localbase:ldflags
diff --git a/science/avogadrolibs/Makefile b/science/avogadrolibs/Makefile
index 37dad2dca8c0..fa146caa1036 100644
--- a/science/avogadrolibs/Makefile
+++ b/science/avogadrolibs/Makefile
@@ -1,5 +1,6 @@
PORTNAME= avogadrolibs
DISTVERSION= 1.95.1
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
@@ -27,7 +28,7 @@ OPTIONS_SUB= yes
HDF5_CMAKE_BOOL= USE_HDF5
HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 \
- libsz.so:science/szip
+ libsz.so:science/libaec
LIBARCHIVE_DESC= Enable optional Libarchive features
LIBARCHIVE_CMAKE_BOOL= USE_LIBARCHIVE
diff --git a/science/axom/Makefile b/science/axom/Makefile
index 250a27ae4001..8792a4fa1a93 100644
--- a/science/axom/Makefile
+++ b/science/axom/Makefile
@@ -1,6 +1,7 @@
PORTNAME= axom
DISTVERSIONPREFIX= v
DISTVERSION= 0.6.1
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
@@ -15,7 +16,7 @@ BROKEN_powerpc= https://github.com/LLNL/axom/issues/743
LIB_DEPENDS= libconduit.so:science/conduit \
libhdf5.so:science/hdf5 \
libsiloh5.so:science/silo \
- libsz.so:science/szip
+ libsz.so:science/libaec
RUN_DEPENDS= sparsehash>0:devel/sparsehash
USES= cmake compiler:c++11-lang
diff --git a/science/cdo/Makefile b/science/cdo/Makefile
index 15444dd2dfa7..da2a1f823586 100644
--- a/science/cdo/Makefile
+++ b/science/cdo/Makefile
@@ -2,6 +2,7 @@
PORTNAME= cdo
PORTVERSION= 2.0.5
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= https://code.mpimet.mpg.de/attachments/download/26823/ \
LOCAL/sunpoet
@@ -54,7 +55,7 @@ NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf
PROJ_CONFIGURE_WITH= proj
PROJ_LIB_DEPENDS= libproj.so:graphics/proj
SZIP_CONFIGURE_WITH= szlib
-SZIP_LIB_DEPENDS= libsz.so:science/szip
+SZIP_LIB_DEPENDS= libsz.so:science/libaec
UDUNITS_CONFIGURE_WITH= udunits2
UDUNITS_LIB_DEPENDS= libudunits2.so:science/udunits
UUID_CONFIGURE_OFF= ac_cv_func_uuid_create=no ac_cv_have_decl_uuid_create=no ac_cv_have_decl_uuid_generate=no ac_cv_lib_uuid_uuid_generate=no
diff --git a/science/cgnslib/Makefile b/science/cgnslib/Makefile
index 0611a1aff8d5..0b1d574c80d8 100644
--- a/science/cgnslib/Makefile
+++ b/science/cgnslib/Makefile
@@ -3,6 +3,7 @@
PORTNAME= cgnslib
PORTVERSION= 4.3.0
DISTVERSIONPREFIX= v
+PORTREVISION= 1
PORTEPOCH= 1
CATEGORIES= science
@@ -37,7 +38,8 @@ TOOLS_DESC= Build the CGNSTools package
FORTRAN_USES= fortran
FORTRAN_CMAKE_BOOL= CGNS_ENABLE_FORTRAN
-HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 libsz.so:science/szip
+HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 \
+ libsz.so:science/libaec
HDF5_CMAKE_BOOL= CGNS_ENABLE_HDF5
HDF5_CMAKE_ON= -DHDF5_INCLUDE_PATH:PATH="${LOCALBASE}/include"
diff --git a/science/cgribex/Makefile b/science/cgribex/Makefile
index 3cd45742337a..dedba8523f3e 100644
--- a/science/cgribex/Makefile
+++ b/science/cgribex/Makefile
@@ -2,7 +2,7 @@
PORTNAME= cgribex
PORTVERSION= 1.9.4
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= https://code.mpimet.mpg.de/attachments/download/21178/ \
LOCAL/sunpoet
@@ -28,7 +28,7 @@ GRIB_API_LIB_DEPENDS= libgrib_api.so:science/grib_api
JASPER_CONFIGURE_WITH= jasper=${LOCALBASE}
JASPER_LIB_DEPENDS= libjasper.so:graphics/jasper
SZIP_CONFIGURE_WITH= szlib=${LOCALBASE}
-SZIP_LIB_DEPENDS= libsz.so:science/szip
+SZIP_LIB_DEPENDS= libsz.so:science/libaec
post-configure:
@${REINPLACE_CMD} -e 's|-Ino/include||g; s|-Lno/lib||g' ${WRKSRC}/Makefile ${WRKSRC}/*/Makefile
diff --git a/science/chemps2/Makefile b/science/chemps2/Makefile
index cbd79e8e0565..4fea31cc72cb 100644
--- a/science/chemps2/Makefile
+++ b/science/chemps2/Makefile
@@ -1,6 +1,7 @@
PORTNAME= CheMPS2
DISTVERSIONPREFIX= v
DISTVERSION= 1.8.12
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
@@ -10,7 +11,7 @@ LICENSE= GPLv2
LICENSE_FILE= ${WRKSRC}/LICENSE
LIB_DEPENDS= libhdf5.so:science/hdf5 \
- libsz.so:science/szip
+ libsz.so:science/libaec
USES= blaslapack:openblas cmake fortran
USE_LDCONFIG= yes
diff --git a/science/chrono/Makefile b/science/chrono/Makefile
index 42b206a2f53c..6c46d90fc27a 100644
--- a/science/chrono/Makefile
+++ b/science/chrono/Makefile
@@ -1,6 +1,6 @@
PORTNAME= chrono
DISTVERSION= 7.0.3
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science devel
PKGNAMESUFFIX= -physics-simulation-engine
@@ -84,7 +84,7 @@ OPENGL_USE= GL=gl,glu,glew
OPENGL_BUILD_DEPENDS= ${LOCALBASE}/include/glm/glm.hpp:math/glm
OPENGL_LIB_DEPENDS= libglfw.so:graphics/glfw
-VEHICLE_LIB_DEPENDS= libsz.so:science/szip \
+VEHICLE_LIB_DEPENDS= libsz.so:science/libaec \
libmpi.so:net/openmpi
.for module in ${ALL_MODULES}
diff --git a/science/conduit/Makefile b/science/conduit/Makefile
index baeadd0dc9d4..c49627744622 100644
--- a/science/conduit/Makefile
+++ b/science/conduit/Makefile
@@ -1,6 +1,7 @@
PORTNAME= conduit
DISTVERSIONPREFIX= v
DISTVERSION= 0.8.3
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
@@ -12,7 +13,7 @@ LICENSE_FILE= ${WRKSRC}/../LICENSE
LIB_DEPENDS= libhdf5.so:science/hdf5 \
libmpi_cxx.so:net/openmpi \
libsiloh5.so:science/silo \
- libsz.so:science/szip
+ libsz.so:science/libaec
USES= cmake:testing compiler:c++11-lang fortran
USE_LDCONFIG= yes
diff --git a/science/dakota/Makefile b/science/dakota/Makefile
index 50520aba8696..824252641ab1 100644
--- a/science/dakota/Makefile
+++ b/science/dakota/Makefile
@@ -1,6 +1,6 @@
PORTNAME= dakota
DISTVERSION= 6.15.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= https://dakota.sandia.gov/sites/default/files/distributions/public/
DISTNAME= ${PORTNAME}-${DISTVERSION}-public-src-cli
@@ -19,7 +19,7 @@ LIB_DEPENDS= libblas.so:math/blas \
libhdf5.so:science/hdf5 \
liblapack.so:math/lapack \
libnlopt.so:math/nlopt \
- libsz.so:science/szip
+ libsz.so:science/libaec
RUN_DEPENDS= bash:shells/bash
USES= cmake compiler:c++11-lang fortran motif perl5 pkgconfig python shebangfix xorg
diff --git a/science/dynare/Makefile b/science/dynare/Makefile
index 59e21deada34..b004eddfb238 100644
--- a/science/dynare/Makefile
+++ b/science/dynare/Makefile
@@ -1,5 +1,6 @@
PORTNAME= dynare
DISTVERSION= 5.1
+PORTREVISION= 1
CATEGORIES= science # economics
MASTER_SITES= https://www.dynare.org/release/source/
@@ -15,7 +16,7 @@ BUILD_DEPENDS= ${LOCALBASE}/include/boost/tokenizer.hpp:devel/boost-libs
LIB_DEPENDS= libhdf5.so:science/hdf5 \
libmatio.so:math/matio \
libopenblas.so:math/openblas \
- libsz.so:science/szip
+ libsz.so:science/libaec
RUN_DEPENDS= epstool:graphics/epstool \
gnuplot:math/gnuplot \
pstoedit:graphics/pstoedit \
diff --git a/science/erkale/Makefile b/science/erkale/Makefile
index 1638baadf1d4..8555996330c5 100644
--- a/science/erkale/Makefile
+++ b/science/erkale/Makefile
@@ -1,5 +1,6 @@
PORTNAME= erkale
DISTVERSION= g20220405
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
@@ -15,7 +16,7 @@ LIB_DEPENDS= libderiv.so:science/libint \
libgsl.so:math/gsl \
libhdf5.so:science/hdf5 \
libint.so:science/libint \
- libsz.so:science/szip \
+ libsz.so:science/libaec \
libxc.so:science/libxc
RUN_DEPENDS= ${LOCALBASE}/share/erkale/basis/6-21G.gbs:science/erkale-pseudopotentials
diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile
index 38089180b737..1be2972fbe74 100644
--- a/science/gnudatalanguage/Makefile
+++ b/science/gnudatalanguage/Makefile
@@ -3,7 +3,7 @@
PORTNAME= gnudatalanguage
PORTVERSION= 1.0.1
DISTVERSIONPREFIX= v
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science lang
.if defined(BUILD_PYTHON_MODULE)
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
@@ -20,7 +20,7 @@ LIB_DEPENDS+= libgeotiff.so:graphics/libgeotiff\
libtiff.so:graphics/tiff \
libshp.so:devel/shapelib \
libpng.so:graphics/png \
- libsz.so:science/szip \
+ libsz.so:science/libaec \
libps.so:print/pslib \
libgsl.so:math/gsl
diff --git a/science/hdf/Makefile b/science/hdf/Makefile
index a565101a1f89..6dab0d3ef722 100644
--- a/science/hdf/Makefile
+++ b/science/hdf/Makefile
@@ -2,6 +2,7 @@
PORTNAME= hdf
PORTVERSION= 4.2.15
+PORTREVISION= 1
PORTEPOCH= 1
CATEGORIES= science archivers graphics
MASTER_SITES= http://www.hdfgroup.org/ftp/HDF/releases/HDF${PORTVERSION}/src/ \
@@ -13,7 +14,7 @@ COMMENT= Hierarchical Data Format library (from NCSA)
NOT_FOR_ARCHS= aarch64 armv6 armv7
NOT_FOR_ARCHS_REASON= fails to compile: no machine type has been defined
-LIB_DEPENDS= libsz.so:science/szip
+LIB_DEPENDS= libsz.so:science/libaec
CONFLICTS_INSTALL= netcdf-4.[0-9]*
diff --git a/science/hdf5-18/Makefile b/science/hdf5-18/Makefile
index a436e9d42621..bb5f149f01ec 100644
--- a/science/hdf5-18/Makefile
+++ b/science/hdf5-18/Makefile
@@ -2,7 +2,7 @@
PORTNAME= hdf5
PORTVERSION= 1.8.21 # When PORTVERSION changes, please update french/med/files/patch-configure
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science archivers graphics
MASTER_SITES= https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/${PORTNAME}-${PORTVERSION}/src/ \
http://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/${PORTNAME}-${PORTVERSION}/src/ \
@@ -52,7 +52,7 @@ PLIST_SUB+= FORTRAN="@comment "
.endif
.if ${PORT_OPTIONS:MSZIP}
-LIB_DEPENDS+= libsz.so:science/szip
+LIB_DEPENDS+= libsz.so:science/libaec
CONFIGURE_ARGS+=--with-szlib=${LOCALBASE}
.endif
diff --git a/science/hdf5/Makefile b/science/hdf5/Makefile
index 5b5039aed81a..8e0133176a16 100644
--- a/science/hdf5/Makefile
+++ b/science/hdf5/Makefile
@@ -2,6 +2,7 @@
PORTNAME= hdf5
PORTVERSION= 1.10.6
+PORTREVISION= 1
PORTEPOCH= 1
CATEGORIES= science archivers graphics
MASTER_SITES= https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${PORTVERSION:R}/${DISTNAME}/src/ \
@@ -45,7 +46,7 @@ PARALLEL_CONFIGURE_ENABLE= parallel
PARALLEL_LDFLAGS= -L${LOCALBASE}/lib -lmpi
PARALLEL_LIB_DEPENDS= libmpi.so:net/mpich
SZIP_CONFIGURE_ON= --with-szlib=${LOCALBASE}
-SZIP_LIB_DEPENDS= libsz.so:science/szip
+SZIP_LIB_DEPENDS= libsz.so:science/libaec
post-patch:
@${REINPLACE_CMD} -e 's|-O3||g' ${WRKSRC}/config/gnu-flags
diff --git a/science/helfem/Makefile b/science/helfem/Makefile
index 1ef0c371f7c4..af210d8e0afd 100644
--- a/science/helfem/Makefile
+++ b/science/helfem/Makefile
@@ -1,6 +1,6 @@
PORTNAME= helfem
DISTVERSION= g20210912
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science # chemistry
MAINTAINER= yuri@FreeBSD.org
@@ -12,7 +12,7 @@ LICENSE_FILE= ${WRKSRC}/COPYING
LIB_DEPENDS= libarmadillo.so:math/armadillo \
libgsl.so:math/gsl \
libhdf5_cpp.so:science/hdf5 \
- libsz.so:science/szip \
+ libsz.so:science/libaec \
libxc.so:science/libxc
USES= cmake fortran
diff --git a/science/lammps/Makefile b/science/lammps/Makefile
index f0915f1d1df9..a6d9c6d3a0e0 100644
--- a/science/lammps/Makefile
+++ b/science/lammps/Makefile
@@ -1,5 +1,6 @@
PORTNAME= lammps
PORTVERSION= ${GH_TAGNAME:C/(stable|patch)_([0-9]{1,2})([A-Z][a-z][a-z])([0-9]{4})/\4.\3.\2/S/Jan/01/S/Feb/02/S/Mar/03/S/Apr/04/S/May/05/S/Jun/06/S/Jul/07/S/Aug/08/S/Sep/09/S/Oct/10/S/Nov/11/S/Dec/12/}
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
@@ -81,7 +82,7 @@ GZIP_CMAKE_BOOL= WITH_GZIP
H5MD_DESC= USER-H5MD package based on libhdf5
H5MD_CMAKE_BOOL= PKG_USER-H5MD
H5MD_LIB_DEPENDS= libhdf5.so:science/hdf5 \
- libsz.so:science/szip
+ libsz.so:science/libaec
KIM_DESC= KIM package based on the OpenKim library/repository
KIM_USES= pkgconfig
diff --git a/science/netcdf/Makefile b/science/netcdf/Makefile
index 01df33791388..c749369cfa21 100644
*** 188 LINES SKIPPED ***