git: 472faa276e36 - main - science/py-DendroPy: Update to 4.5.2

Go to: [ bottom of page ] [ top of archives ] [ this month ]
From: Wen Heping <wen_at_FreeBSD.org>
Date: Sun, 05 Jun 2022 07:44:35 UTC
The branch main has been updated by wen:

URL: https://cgit.FreeBSD.org/ports/commit/?id=472faa276e363f720e69c93aed06a207d94ce7bc

commit 472faa276e363f720e69c93aed06a207d94ce7bc
Author:     Wen Heping <wen@FreeBSD.org>
AuthorDate: 2022-06-05 07:43:08 +0000
Commit:     Wen Heping <wen@FreeBSD.org>
CommitDate: 2022-06-05 07:43:08 +0000

    science/py-DendroPy: Update to 4.5.2
    
    PR:             263706
    Reported by:    yuri@
    Approved by:    maintainer(timeout, >1 month)
---
 science/py-DendroPy/Makefile  |   6 +-
 science/py-DendroPy/distinfo  |   6 +-
 science/py-DendroPy/pkg-plist | 317 ------------------------------------------
 3 files changed, 6 insertions(+), 323 deletions(-)

diff --git a/science/py-DendroPy/Makefile b/science/py-DendroPy/Makefile
index 6b90a05a82fc..fc80e1259aa2 100644
--- a/science/py-DendroPy/Makefile
+++ b/science/py-DendroPy/Makefile
@@ -1,7 +1,7 @@
 # Created by: Wen Heping <wenheping@gmail.com>
 
 PORTNAME=	DendroPy
-PORTVERSION=	4.4.0
+PORTVERSION=	4.5.2
 CATEGORIES=	science python
 MASTER_SITES=	CHEESESHOP
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
@@ -11,7 +11,7 @@ COMMENT=	Phylogenetic computing library
 
 LICENSE=	BSD3CLAUSE
 
-USES=		python:3.6+
-USE_PYTHON=	distutils py3kplist
+USES=		python:3.7+
+USE_PYTHON=	distutils autoplist
 
 .include <bsd.port.mk>
diff --git a/science/py-DendroPy/distinfo b/science/py-DendroPy/distinfo
index 9c7677db26e1..e9699e82a093 100644
--- a/science/py-DendroPy/distinfo
+++ b/science/py-DendroPy/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1539118893
-SHA256 (DendroPy-4.4.0.tar.gz) = f0a0e2ce78b3ed213d6c1791332d57778b7f63d602430c1548a5d822acf2799c
-SIZE (DendroPy-4.4.0.tar.gz) = 15166418
+TIMESTAMP = 1654414835
+SHA256 (DendroPy-4.5.2.tar.gz) = 3e5d2522170058ebc8d1ee63a7f2d25b915e34957dc02693ebfdc15f347a0101
+SIZE (DendroPy-4.5.2.tar.gz) = 15201088
diff --git a/science/py-DendroPy/pkg-plist b/science/py-DendroPy/pkg-plist
deleted file mode 100644
index 843368df223e..000000000000
--- a/science/py-DendroPy/pkg-plist
+++ /dev/null
@@ -1,317 +0,0 @@
-bin/sumlabels.py
-bin/sumtrees.py
-%%PYTHON_SITELIBDIR%%/dendropy/__init__.py
-%%PYTHON_SITELIBDIR%%/dendropy/__init__.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/__init__.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/__main__.py
-%%PYTHON_SITELIBDIR%%/dendropy/__main__.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/__main__.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/__init__.py
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/__init__.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/__init__.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/combinatorics.py
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/combinatorics.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/combinatorics.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/mathfn.py
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/mathfn.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/mathfn.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/phylogeneticdistance.py
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/phylogeneticdistance.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/phylogeneticdistance.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/popgenstat.py
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/popgenstat.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/popgenstat.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/probability.py
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/probability.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/probability.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/profiledistance.py
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/profiledistance.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/profiledistance.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/statistics.py
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/statistics.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/statistics.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/treecompare.py
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/treecompare.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/treecompare.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/treemeasure.py
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/treemeasure.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/treemeasure.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/treescore.py
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/treescore.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/treescore.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/treesum.py
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/treesum.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/calculate/treesum.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/__init__.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/__init__.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/__init__.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/fastareader.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/fastareader.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/fastareader.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/fastawriter.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/fastawriter.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/fastawriter.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/ioservice.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/ioservice.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/ioservice.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/newick.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/newick.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/newick.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/newickreader.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/newickreader.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/newickreader.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/newickwriter.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/newickwriter.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/newickwriter.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/newickyielder.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/newickyielder.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/newickyielder.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlreader.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlreader.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlreader.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlwriter.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlwriter.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlwriter.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlyielder.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlyielder.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlyielder.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusprocessing.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusprocessing.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusprocessing.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexuswriter.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexuswriter.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexuswriter.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusyielder.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusyielder.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusyielder.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/phylipreader.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/phylipreader.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/phylipreader.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/phylipwriter.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/phylipwriter.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/phylipwriter.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/tokenizer.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/tokenizer.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/tokenizer.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/xmlprocessing.py
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/xmlprocessing.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/dataio/xmlprocessing.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/__init__.py
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/__init__.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/__init__.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/basemodel.py
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/basemodel.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/basemodel.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/charmatrixmodel.py
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/charmatrixmodel.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/charmatrixmodel.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/charstatemodel.py
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/charstatemodel.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/charstatemodel.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/datasetmodel.py
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/datasetmodel.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/datasetmodel.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/taxonmodel.py
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/taxonmodel.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/taxonmodel.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/treecollectionmodel.py
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/treecollectionmodel.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/treecollectionmodel.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/treemodel.py
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/treemodel.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/datamodel/treemodel.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/interop/__init__.py
-%%PYTHON_SITELIBDIR%%/dendropy/interop/__init__.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/interop/__init__.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/interop/ape.py
-%%PYTHON_SITELIBDIR%%/dendropy/interop/ape.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/interop/ape.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/interop/biopython.py
-%%PYTHON_SITELIBDIR%%/dendropy/interop/biopython.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/interop/biopython.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/interop/entrez.py
-%%PYTHON_SITELIBDIR%%/dendropy/interop/entrez.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/interop/entrez.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/interop/ete.py
-%%PYTHON_SITELIBDIR%%/dendropy/interop/ete.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/interop/ete.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/interop/gbif.py
-%%PYTHON_SITELIBDIR%%/dendropy/interop/gbif.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/interop/gbif.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/interop/genbank.py
-%%PYTHON_SITELIBDIR%%/dendropy/interop/genbank.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/interop/genbank.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/interop/muscle.py
-%%PYTHON_SITELIBDIR%%/dendropy/interop/muscle.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/interop/muscle.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/interop/paup.py
-%%PYTHON_SITELIBDIR%%/dendropy/interop/paup.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/interop/paup.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/interop/raxml.py
-%%PYTHON_SITELIBDIR%%/dendropy/interop/raxml.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/interop/raxml.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/interop/rspr.py
-%%PYTHON_SITELIBDIR%%/dendropy/interop/rspr.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/interop/rspr.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/interop/rstats.py
-%%PYTHON_SITELIBDIR%%/dendropy/interop/rstats.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/interop/rstats.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/interop/seqgen.py
-%%PYTHON_SITELIBDIR%%/dendropy/interop/seqgen.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/interop/seqgen.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/__init__.py
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/__init__.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/__init__.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/coalescent.py
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/coalescent.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/coalescent.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/continuous.py
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/continuous.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/continuous.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/ncbi.py
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/ncbi.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/ncbi.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/popgensim.py
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/popgensim.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/popgensim.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/popgenstat.py
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/popgenstat.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/popgenstat.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/reconcile.py
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/reconcile.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/reconcile.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/seqmodel.py
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/seqmodel.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/seqmodel.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/seqsim.py
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/seqsim.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/seqsim.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/treecalc.py
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/treecalc.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/treecalc.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/treemanip.py
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/treemanip.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/treemanip.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/treesim.py
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/treesim.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/treesim.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/treesplit.py
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/treesplit.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/treesplit.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/treesum.py
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/treesum.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/legacy/treesum.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/mathlib/__init__.py
-%%PYTHON_SITELIBDIR%%/dendropy/mathlib/__init__.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/mathlib/__init__.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/mathlib/mathfn.py
-%%PYTHON_SITELIBDIR%%/dendropy/mathlib/mathfn.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/mathlib/mathfn.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/mathlib/probability.py
-%%PYTHON_SITELIBDIR%%/dendropy/mathlib/probability.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/mathlib/probability.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/mathlib/statistics.py
-%%PYTHON_SITELIBDIR%%/dendropy/mathlib/statistics.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/mathlib/statistics.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/model/__init__.py
-%%PYTHON_SITELIBDIR%%/dendropy/model/__init__.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/model/__init__.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/model/birthdeath.py
-%%PYTHON_SITELIBDIR%%/dendropy/model/birthdeath.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/model/birthdeath.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/model/coalescent.py
-%%PYTHON_SITELIBDIR%%/dendropy/model/coalescent.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/model/coalescent.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/model/continuous.py
-%%PYTHON_SITELIBDIR%%/dendropy/model/continuous.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/model/continuous.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/model/discrete.py
-%%PYTHON_SITELIBDIR%%/dendropy/model/discrete.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/model/discrete.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/model/multispeciescoalescent.py
-%%PYTHON_SITELIBDIR%%/dendropy/model/multispeciescoalescent.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/model/multispeciescoalescent.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/model/parsimony.py
-%%PYTHON_SITELIBDIR%%/dendropy/model/parsimony.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/model/parsimony.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/model/protractedspeciation.py
-%%PYTHON_SITELIBDIR%%/dendropy/model/protractedspeciation.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/model/protractedspeciation.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/model/reconcile.py
-%%PYTHON_SITELIBDIR%%/dendropy/model/reconcile.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/model/reconcile.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/model/treeshape.py
-%%PYTHON_SITELIBDIR%%/dendropy/model/treeshape.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/model/treeshape.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/simulate/__init__.py
-%%PYTHON_SITELIBDIR%%/dendropy/simulate/__init__.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/simulate/__init__.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/simulate/charsim.py
-%%PYTHON_SITELIBDIR%%/dendropy/simulate/charsim.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/simulate/charsim.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/simulate/popgensim.py
-%%PYTHON_SITELIBDIR%%/dendropy/simulate/popgensim.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/simulate/popgensim.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/simulate/treesim.py
-%%PYTHON_SITELIBDIR%%/dendropy/simulate/treesim.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/simulate/treesim.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/__init__.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/__init__.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/__init__.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/bibtex.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/bibtex.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/bibtex.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/bitprocessing.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/bitprocessing.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/bitprocessing.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/cli.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/cli.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/cli.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/constants.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/constants.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/constants.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/container.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/container.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/container.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/debug.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/debug.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/debug.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/deprecate.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/deprecate.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/deprecate.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/error.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/error.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/error.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/filesys.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/filesys.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/filesys.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/libexec/__init__.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/libexec/__init__.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/libexec/__init__.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/messaging.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/messaging.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/messaging.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/metavar.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/metavar.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/metavar.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/processio.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/processio.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/processio.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/terminal.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/terminal.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/terminal.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/textprocessing.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/textprocessing.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/textprocessing.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/timeprocessing.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/timeprocessing.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/timeprocessing.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/urlio.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/urlio.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/urlio.pyo
-%%PYTHON_SITELIBDIR%%/dendropy/utility/vcsinfo.py
-%%PYTHON_SITELIBDIR%%/dendropy/utility/vcsinfo.pyc
-%%PYTHON_SITELIBDIR%%/dendropy/utility/vcsinfo.pyo