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(8.16.1/8.16.1) with ESMTP id 26ICpoan091923; Mon, 18 Jul 2022 12:51:50 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 26ICpoHP091922; Mon, 18 Jul 2022 12:51:50 GMT (envelope-from git) Date: Mon, 18 Jul 2022 12:51:50 GMT Message-Id: <202207181251.26ICpoHP091922@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Po-Chuan Hsieh Subject: git: a43418b81530 - main - science/hdf5: Update to 1.12.2 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: sunpoet X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: a43418b81530f7e897abfbe18dd59f44265a1a0f Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1658148710; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=y2Phf7rG8QTwM0sPLO1ojW/VuIsfZjgO29rV/0GK+K8=; b=AiYxjftLHRq8w54DewKW72/12hwvIoBHcbCnt47QvBcd+EtU0MeyKCoMt6SZ95ktgXFxw2 luA3CImCqu3XH7BVq53MZw4D34mBlWYCFQ0wt6ndaQr5G88rfgPCzBCIvV2dwbR9xOUfWN AxtkuAu91azNFhm7GWNQpIiP2Chxracl1t0DgcBkzwcvTAyk+PFtkzYV/TzTQPvvpGGM+W nJ/ZX6tdrgV1OdGkFvJyIHZg9JDgVqJVEfVgbHmHv9SjHgS2fSB+A9z5NYz54i5oaJVZJv 8X0fAX1VWBoDVVeWv53qdSTuAglnJU00F2dXUiAH/01mlC7Sd7ih+XkEiFpxtw== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1658148710; a=rsa-sha256; cv=none; b=H7v7Pv3pIQGYqOD+An793n17YtweFIevQ44Ssz+QG0P+qEa4j48Nali2ZuVADHDSyBre9v d1RjsSx75/9yTiHVoNaHf38J39skHZoD6RIgMgF1Ux72hywHwsFEAuoaGQdCquGpXINBTN mbkOUI9FcbUtciV54eaJdUgiuwYcPqMgUieItpQyHwzVbxgeh2N87AWRtSRMWjKzuLS40L 1nqV2I18ta2pJXVnAowWq01Bk6XBQyEOvKpdox+mnm5FUfmBuuc6idkZLK61yuECnnAbN9 MfhdfWl5cLIPVEzRzFEkuL+gKXreN+uX5/7yGranuuiDVvAPU6aUcA69sqCl/A== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by sunpoet: URL: https://cgit.FreeBSD.org/ports/commit/?id=a43418b81530f7e897abfbe18dd59f44265a1a0f commit a43418b81530f7e897abfbe18dd59f44265a1a0f Author: Po-Chuan Hsieh AuthorDate: 2022-07-18 12:50:16 +0000 Commit: Po-Chuan Hsieh CommitDate: 2022-07-18 12:50:16 +0000 science/hdf5: Update to 1.12.2 Changes: https://portal.hdfgroup.org/display/support/HDF5+1.12.0 https://portal.hdfgroup.org/display/support/HDF5+1.12.1 https://portal.hdfgroup.org/display/support/HDF5+1.12.2 PR: 265152 Exp-run by: antoine --- science/hdf5/Makefile | 76 +++--- science/hdf5/distinfo | 6 +- science/hdf5/pkg-plist | 689 ++++++++++++++++++++++++++++++++++++++++--------- 3 files changed, 616 insertions(+), 155 deletions(-) diff --git a/science/hdf5/Makefile b/science/hdf5/Makefile index c19e33a22424..4fd8a52f4743 100644 --- a/science/hdf5/Makefile +++ b/science/hdf5/Makefile @@ -1,29 +1,32 @@ # Created by: ijliao PORTNAME= hdf5 -PORTVERSION= 1.10.9 +PORTVERSION= 1.12.2 PORTEPOCH= 1 CATEGORIES= science archivers graphics -MASTER_SITES= https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${PORTVERSION:R}/${DISTNAME}/src/ \ - LOCAL/sunpoet +MASTER_SITES= https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${PORTVERSION:R}/hdf5-${PORTVERSION}/src/ +DISTNAME= CMake-hdf5-${PORTVERSION} MAINTAINER= sunpoet@FreeBSD.org -COMMENT= Hierarchical Data Format library (from NCSA) +COMMENT= Hierarchical Data Format library (from NCSA) (latest) LICENSE= BSD4CLAUSE LICENSE_FILE= ${WRKSRC}/COPYING -USES= compiler:c11 cpe libtool localbase tar:bzip2 -CONFIGURE_ARGS= --enable-hl \ - --enable-instrument \ - --enable-strict-format-checks \ - --with-default-api-version=v110 -GNU_CONFIGURE= yes -INSTALL_TARGET= install-strip -MAKE_JOBS_UNSAFE= yes -TEST_TARGET= check +USES= cmake compiler:c11 localbase perl5 +USE_PERL5= build + +CFLAGS+= -D__LONG_LONG_SUPPORTED +CMAKE_ARGS= -DDEFAULT_API_VERSION=v112 \ + -DHDF5_INSTALL_CMAKE_DIR=lib/cmake/hdf5 \ + -DHDF5_INSTALL_INCLUDE_DIR=${PREFIX}/include +CMAKE_ON= HDF5_BUILD_HL_LIB HDF5_BUILD_TOOLS HDF5_ENABLE_INSTRUMENT HDF5_ENABLE_Z_LIB_SUPPORT HDF5_STRICT_FORMAT_CHECKS +TEST_TARGET= test USE_LDCONFIG= yes +PLIST_SUB= PORTVERSION=${PORTVERSION} +WRKSRC_SUBDIR= hdf5-${PORTVERSION} + CONFLICTS_INSTALL= hdf CPE_VENDOR= hdfgroup @@ -34,26 +37,41 @@ OPTIONS_RADIO_SUPPORT= CXX PARALLEL OPTIONS_DEFAULT=CXX SZIP OPTIONS_SUB= yes PARALLEL_DESC= Parallel support +PARALLEL_IMPLIES= FORTRAN -CXX_CONFIGURE_ENABLE= cxx -DEBUG_CONFIGURE_OFF= --enable-build-mode=production -DEBUG_CONFIGURE_ON= --enable-build-mode=debug -FORTRAN_CONFIGURE_ENABLE= fortran +CXX_CMAKE_BOOL= HDF5_BUILD_CPP_LIB +EXAMPLES_CMAKE_BOOL= HDF5_BUILD_EXAMPLES HDF5_TEST_EXAMPLES HDF5_PACK_EXAMPLES +FORTRAN_CMAKE_BOOL= HDF5_BUILD_FORTRAN FORTRAN_CONFIGURE_ENV= F9X=${FC} FORTRAN_USES= fortran -PARALLEL_CONFIGURE_ENABLE= parallel -PARALLEL_LDFLAGS= -L${LOCALBASE}/lib -lmpi -PARALLEL_LIB_DEPENDS= libmpi.so:net/mpich -SZIP_CONFIGURE_ON= --with-szlib=${LOCALBASE} +PARALLEL_CMAKE_BOOL= HDF5_ENABLE_PARALLEL +PARALLEL_USES= localbase:ldflags mpi:mpich +PARALLEL_VARS= FCFLAGS+=-I${LOCALBASE}/include +SZIP_CMAKE_BOOL= HDF5_ENABLE_SZIP_SUPPORT SZIP_LIB_DEPENDS= libsz.so:science/libaec -post-patch: - @${REINPLACE_CMD} -e 's|hdf5_examples|examples/hdf5|' ${WRKSRC}/configure - @${REINPLACE_CMD} -e 's|-O3||g' ${WRKSRC}/config/gnu-flags - @${REINPLACE_CMD} \ - -e '/LD_LIBRARY_PATH/ s|^|#|' \ - -e 's|(INSTALL)|(INSTALL_DATA)|' \ - `${FIND} ${WRKSRC} -regex '.*/examples/Makefile.in'` - @${REINPLACE_CMD} -e 's|\[ -a|\[ -f|g' `${FIND} ${WRKSRC} -name \*.sh\*` +post-patch-EXAMPLES-on: + @${MKDIR} ${WRKDIR}/.build + @${TAR} -C ${WRKDIR}/.build -xf ${WRKSRC}/../HDF5Examples-1.12.9-Source.tar.gz + +post-install: + ${MKDIR} ${STAGEDIR}${DATADIR} + ${RM} ${STAGEDIR}${PREFIX}/share/COPYING + ${RM} ${STAGEDIR}${DATADIR}/COPYING + cd ${STAGEDIR}${PREFIX}/share && ${MV} RELEASE.txt USING_HDF5_CMake.txt ${STAGEDIR}${DATADIR}/ + ${LN} -fs hdf5.pc ${STAGEDIR}${PREFIX}/libdata/pkgconfig/hdf5-${PORTVERSION}.pc + ${LN} -fs hdf5_hl.pc ${STAGEDIR}${PREFIX}/libdata/pkgconfig/hdf5_hl-${PORTVERSION}.pc + +post-install-CXX-on: + ${LN} -fs hdf5_cpp.pc ${STAGEDIR}${PREFIX}/libdata/pkgconfig/hdf5_cpp-${PORTVERSION}.pc + ${LN} -fs hdf5_hl_cpp.pc ${STAGEDIR}${PREFIX}/libdata/pkgconfig/hdf5_hl_cpp-${PORTVERSION}.pc + +post-install-EXAMPLES-on: + cd ${STAGEDIR}${PREFIX}/share && ${MV} CTestScript.cmake HDF5_Examples.cmake HDF5_Examples_options.cmake USING_CMake_Examples.txt ${STAGEDIR}${DATADIR}/ + ${MV} ${STAGEDIR}${PREFIX}/share/HDF5Examples ${STAGEDIR}${EXAMPLESDIR} + +post-install-FORTRAN-on: + ${LN} -fs hdf5_fortran.pc ${STAGEDIR}${PREFIX}/libdata/pkgconfig/hdf5_fortran-${PORTVERSION}.pc + ${LN} -fs hdf5_hl_fortran.pc ${STAGEDIR}${PREFIX}/libdata/pkgconfig/hdf5_hl_fortran-${PORTVERSION}.pc .include diff --git a/science/hdf5/distinfo b/science/hdf5/distinfo index 8d8f933aa991..3d7002c1c34c 100644 --- a/science/hdf5/distinfo +++ b/science/hdf5/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1655148219 -SHA256 (hdf5-1.10.9.tar.bz2) = 00c4be7096f36fdcafa4f974e126c6c1412428e38ebc7b181d907459e781f191 -SIZE (hdf5-1.10.9.tar.bz2) = 10703325 +TIMESTAMP = 1652642679 +SHA256 (CMake-hdf5-1.12.2.tar.gz) = 04621dd1b96426f7f7883d508657fb1ee579ddd22f4c38ababfd8a408abd6525 +SIZE (CMake-hdf5-1.12.2.tar.gz) = 34474552 diff --git a/science/hdf5/pkg-plist b/science/hdf5/pkg-plist index 8756e28ba3be..000ab924b533 100644 --- a/science/hdf5/pkg-plist +++ b/science/hdf5/pkg-plist @@ -1,30 +1,53 @@ bin/gif2h5 +bin/gif2h5-shared bin/h52gif +bin/h52gif-shared %%CXX%%bin/h5c++ %%CXX%%bin/h5cc bin/h5clear +bin/h5clear-shared bin/h5copy +bin/h5copy-shared bin/h5debug +bin/h5debug-shared bin/h5diff +bin/h5diff-shared bin/h5dump -%%FORTRAN%%bin/h5fc +bin/h5dump-shared +%%FORTRAN%%%%NO_PARALLEL%%bin/h5fc bin/h5format_convert +bin/h5format_convert-shared +%%CXX%%bin/h5hlc++ +bin/h5hlcc +%%FORTRAN%%bin/h5hlfc bin/h5import +bin/h5import-shared bin/h5jam +bin/h5jam-shared bin/h5ls +bin/h5ls-shared bin/h5mkgrp +bin/h5mkgrp-shared %%PARALLEL%%bin/h5pcc %%PARALLEL%%bin/h5perf -bin/h5perf_serial -bin/h5redeploy +%%NO_PARALLEL%%bin/h5perf_serial bin/h5repack +bin/h5repack-shared bin/h5repart +bin/h5repart-shared bin/h5stat +bin/h5stat-shared bin/h5unjam +bin/h5unjam-shared bin/h5watch +bin/h5watch-shared +bin/mirror_server +bin/mirror_server_stop %%PARALLEL%%bin/ph5diff +%%PARALLEL%%bin/ph5diff-shared include/H5ACpublic.h %%CXX%%include/H5AbstractDs.h +%%CXX%%include/H5Alltypes.h include/H5Apublic.h %%CXX%%include/H5ArrayType.h %%CXX%%include/H5AtomType.h @@ -44,6 +67,7 @@ include/H5DSpublic.h %%CXX%%include/H5DcreatProp.h include/H5Dpublic.h %%CXX%%include/H5DxferProp.h +include/H5ESpublic.h %%CXX%%include/H5EnumType.h include/H5Epubgen.h include/H5Epublic.h @@ -59,6 +83,7 @@ include/H5FDmpio.h include/H5FDmulti.h include/H5FDpublic.h include/H5FDros3.h +include/H5FDs3comms.h include/H5FDsec2.h include/H5FDsplitter.h include/H5FDstdio.h @@ -83,6 +108,7 @@ include/H5LTpublic.h %%CXX%%include/H5Location.h include/H5Lpublic.h include/H5MMpublic.h +include/H5Mpublic.h %%CXX%%include/H5Object.h %%CXX%%include/H5OcreatProp.h include/H5Opublic.h @@ -98,11 +124,19 @@ include/H5Spublic.h %%CXX%%include/H5StrType.h include/H5TBpublic.h include/H5Tpublic.h +include/H5VLconnector.h +include/H5VLconnector_passthru.h +include/H5VLnative.h +include/H5VLpassthru.h +include/H5VLpublic.h %%CXX%%include/H5VarLenType.h include/H5Zpublic.h include/H5api_adpt.h +%%FORTRAN%%include/H5f90.h %%FORTRAN%%include/H5f90i.h %%FORTRAN%%include/H5f90i_gen.h +%%FORTRAN%%include/H5f90proto.h +%%FORTRAN%%include/H5fortran_types.F90 include/H5overflow.h include/H5pubconf.h include/H5public.h @@ -130,140 +164,549 @@ include/H5version.h %%FORTRAN%%include/h5t.mod %%FORTRAN%%include/h5tb.mod %%FORTRAN%%include/h5tb_const.mod +%%FORTRAN%%include/h5vl.mod %%FORTRAN%%include/h5z.mod include/hdf5.h %%FORTRAN%%include/hdf5.mod include/hdf5_hl.h +%%FORTRAN%%include/shared/h5_gen.mod +%%FORTRAN%%include/shared/h5a.mod +%%FORTRAN%%include/shared/h5d.mod +%%FORTRAN%%include/shared/h5ds.mod +%%FORTRAN%%include/shared/h5e.mod +%%FORTRAN%%include/shared/h5f.mod +%%FORTRAN%%include/shared/h5fortkit.mod +%%FORTRAN%%include/shared/h5fortran_types.mod +%%FORTRAN%%include/shared/h5g.mod +%%FORTRAN%%include/shared/h5global.mod +%%FORTRAN%%include/shared/h5i.mod +%%FORTRAN%%include/shared/h5im.mod +%%FORTRAN%%include/shared/h5l.mod +%%FORTRAN%%include/shared/h5lib.mod +%%FORTRAN%%include/shared/h5lt.mod +%%FORTRAN%%include/shared/h5lt_const.mod +%%FORTRAN%%include/shared/h5o.mod +%%FORTRAN%%include/shared/h5p.mod +%%FORTRAN%%include/shared/h5r.mod +%%FORTRAN%%include/shared/h5s.mod +%%FORTRAN%%include/shared/h5t.mod +%%FORTRAN%%include/shared/h5tb.mod +%%FORTRAN%%include/shared/h5tb_const.mod +%%FORTRAN%%include/shared/h5vl.mod +%%FORTRAN%%include/shared/h5z.mod +%%FORTRAN%%include/shared/hdf5.mod +%%FORTRAN%%include/static/h5_gen.mod +%%FORTRAN%%include/static/h5a.mod +%%FORTRAN%%include/static/h5d.mod +%%FORTRAN%%include/static/h5ds.mod +%%FORTRAN%%include/static/h5e.mod +%%FORTRAN%%include/static/h5f.mod +%%FORTRAN%%include/static/h5fortkit.mod +%%FORTRAN%%include/static/h5fortran_types.mod +%%FORTRAN%%include/static/h5g.mod +%%FORTRAN%%include/static/h5global.mod +%%FORTRAN%%include/static/h5i.mod +%%FORTRAN%%include/static/h5im.mod +%%FORTRAN%%include/static/h5l.mod +%%FORTRAN%%include/static/h5lib.mod +%%FORTRAN%%include/static/h5lt.mod +%%FORTRAN%%include/static/h5lt_const.mod +%%FORTRAN%%include/static/h5o.mod +%%FORTRAN%%include/static/h5p.mod +%%FORTRAN%%include/static/h5r.mod +%%FORTRAN%%include/static/h5s.mod +%%FORTRAN%%include/static/h5t.mod +%%FORTRAN%%include/static/h5tb.mod +%%FORTRAN%%include/static/h5tb_const.mod +%%FORTRAN%%include/static/h5vl.mod +%%FORTRAN%%include/static/h5z.mod +%%FORTRAN%%include/static/hdf5.mod +lib/cmake/hdf5/hdf5-config-version.cmake +lib/cmake/hdf5/hdf5-config.cmake +lib/cmake/hdf5/hdf5-targets-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/hdf5/hdf5-targets.cmake lib/libhdf5.a lib/libhdf5.settings lib/libhdf5.so -lib/libhdf5.so.103 -lib/libhdf5.so.103.3.2 +lib/libhdf5.so.200 +lib/libhdf5.so.200.2.0 %%CXX%%lib/libhdf5_cpp.a %%CXX%%lib/libhdf5_cpp.so -%%CXX%%lib/libhdf5_cpp.so.103 -%%CXX%%lib/libhdf5_cpp.so.103.4.1 +%%CXX%%lib/libhdf5_cpp.so.200 +%%CXX%%lib/libhdf5_cpp.so.200.2.0 +%%FORTRAN%%lib/libhdf5_f90cstub.a +%%FORTRAN%%lib/libhdf5_f90cstub.so +%%FORTRAN%%lib/libhdf5_f90cstub.so.200 +%%FORTRAN%%lib/libhdf5_f90cstub.so.200.1.1 %%FORTRAN%%lib/libhdf5_fortran.a %%FORTRAN%%lib/libhdf5_fortran.so -%%FORTRAN%%lib/libhdf5_fortran.so.102 -%%FORTRAN%%lib/libhdf5_fortran.so.102.1.2 +%%FORTRAN%%lib/libhdf5_fortran.so.200 +%%FORTRAN%%lib/libhdf5_fortran.so.200.1.1 lib/libhdf5_hl.a lib/libhdf5_hl.so -lib/libhdf5_hl.so.100 -lib/libhdf5_hl.so.100.1.6 +lib/libhdf5_hl.so.200 +lib/libhdf5_hl.so.200.1.0 %%CXX%%lib/libhdf5_hl_cpp.a %%CXX%%lib/libhdf5_hl_cpp.so -%%CXX%%lib/libhdf5_hl_cpp.so.100 -%%CXX%%lib/libhdf5_hl_cpp.so.100.1.7 +%%CXX%%lib/libhdf5_hl_cpp.so.200 +%%CXX%%lib/libhdf5_hl_cpp.so.200.1.0 +%%FORTRAN%%lib/libhdf5_hl_f90cstub.a +%%FORTRAN%%lib/libhdf5_hl_f90cstub.so +%%FORTRAN%%lib/libhdf5_hl_f90cstub.so.200 +%%FORTRAN%%lib/libhdf5_hl_f90cstub.so.200.0.2 %%FORTRAN%%lib/libhdf5_hl_fortran.a %%FORTRAN%%lib/libhdf5_hl_fortran.so -%%FORTRAN%%lib/libhdf5hl_fortran.a -%%FORTRAN%%lib/libhdf5hl_fortran.so -%%FORTRAN%%lib/libhdf5hl_fortran.so.100 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