git: 3100961a1a18 - main - science/pnetcdf: Update to 1.12.3

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From: Po-Chuan Hsieh <sunpoet_at_FreeBSD.org>
Date: Mon, 18 Jul 2022 12:41:02 UTC
The branch main has been updated by sunpoet:

URL: https://cgit.FreeBSD.org/ports/commit/?id=3100961a1a18df741ae58dd1394bb38e13fead88

commit 3100961a1a18df741ae58dd1394bb38e13fead88
Author:     Po-Chuan Hsieh <sunpoet@FreeBSD.org>
AuthorDate: 2022-07-18 12:34:00 +0000
Commit:     Po-Chuan Hsieh <sunpoet@FreeBSD.org>
CommitDate: 2022-07-18 12:39:50 +0000

    science/pnetcdf: Update to 1.12.3
    
    - Update MASTER_SITES
    - Update WWW
    
    Changes:        https://github.com/Parallel-NetCDF/Parallel-NetCDF.github.io/tree/master/Release_notes
---
 science/pnetcdf/Makefile                   | 19 ++++-----------
 science/pnetcdf/distinfo                   |  6 ++---
 science/pnetcdf/files/patch-configure      | 38 +++++++++++++++---------------
 science/pnetcdf/files/patch-macros.make.in | 11 ---------
 science/pnetcdf/pkg-descr                  |  3 ++-
 science/pnetcdf/pkg-plist                  |  6 +++--
 6 files changed, 33 insertions(+), 50 deletions(-)

diff --git a/science/pnetcdf/Makefile b/science/pnetcdf/Makefile
index fac1f2ab0267..6a33ad1a60ce 100644
--- a/science/pnetcdf/Makefile
+++ b/science/pnetcdf/Makefile
@@ -1,17 +1,15 @@
 # Created by: Chao Shin <quakelee@cn.FreeBSD.org>
 
 PORTNAME=	pnetcdf
-PORTVERSION=	1.8.1
-PORTREVISION=	10
+PORTVERSION=	1.12.3
 CATEGORIES=	science parallel
-MASTER_SITES=	http://cucis.ece.northwestern.edu/projects/PnetCDF/Release/ \
+MASTER_SITES=	https://parallel-netcdf.github.io/Release/ \
 		LOCAL/sunpoet
-DISTNAME=	parallel-netcdf-${PORTVERSION}
 
 MAINTAINER=	sunpoet@FreeBSD.org
 COMMENT=	Library providing high-performance I/O
 
-USES=		fortran gmake pathfix perl5 tar:bzip2
+USES=		fortran gmake libtool pathfix perl5
 USE_PERL5=	build
 
 CFLAGS+=	-fPIC
@@ -19,11 +17,8 @@ CONFIGURE_ARGS=	--with-mpi=${MPI_HOME} ac_cv_fc_compiler_nag=no
 GNU_CONFIGURE=	yes
 MAKE_JOBS_UNSAFE=	yes
 
-PORTDOCS=	COPYRIGHT INSTALL README
-
 CONFLICTS_INSTALL=	hdf-4.*
 
-OPTIONS_DEFINE=	DOCS
 OPTIONS_SINGLE=	MPI
 OPTIONS_SINGLE_MPI=	OPENMPI MPICH
 OPTIONS_DEFAULT=OPENMPI
@@ -41,11 +36,7 @@ FCFLAGS+=	-fallow-argument-mismatch
 post-patch:
 	@${REINPLACE_CMD} -e '/$$(INSTALL.*$$(PREFIX)/ s|$$(PREFIX)|$$(DESTDIR)&|' ${WRKSRC}/Makefile.in
 
-post-install:
-	${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/n* ${STAGEDIR}${PREFIX}/bin/pnetcdf_version
-
-post-install-DOCS-on:
-	${MKDIR} ${STAGEDIR}${DOCSDIR}/
-	cd ${WRKSRC}/ && ${INSTALL_DATA} ${PORTDOCS} ${STAGEDIR}${DOCSDIR}/
+x-post-install:
+	${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/cdfdiff ${STAGEDIR}${PREFIX}/bin/n* ${STAGEDIR}${PREFIX}/bin/pnetcdf_version
 
 .include <bsd.port.post.mk>
diff --git a/science/pnetcdf/distinfo b/science/pnetcdf/distinfo
index 1db526817db0..521ca06a0e8c 100644
--- a/science/pnetcdf/distinfo
+++ b/science/pnetcdf/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1485797773
-SHA256 (parallel-netcdf-1.8.1.tar.bz2) = d0fa7059130c5f99ba4d7ea5e661e2103fbd302f3066fd95a0d1c7f913b848c4
-SIZE (parallel-netcdf-1.8.1.tar.bz2) = 900244
+TIMESTAMP = 1657835407
+SHA256 (pnetcdf-1.12.3.tar.gz) = 439e359d09bb93d0e58a6e3f928f39c2eae965b6c97f64e67cd42220d6034f77
+SIZE (pnetcdf-1.12.3.tar.gz) = 2312555
diff --git a/science/pnetcdf/files/patch-configure b/science/pnetcdf/files/patch-configure
index 6ceee86f9c97..37a76bfe4fbb 100644
--- a/science/pnetcdf/files/patch-configure
+++ b/science/pnetcdf/files/patch-configure
@@ -1,21 +1,21 @@
---- configure.orig	2016-03-03 20:07:36 UTC
+--- configure.orig	2022-02-20 19:39:24 UTC
 +++ configure
-@@ -3056,12 +3056,12 @@ fi
+@@ -4337,12 +4337,12 @@ ac_user_MPICC=$MPICC
+ ac_user_MPICXX=$MPICXX
+ ac_user_MPIF77=$MPIF77
+ ac_user_MPIF90=$MPIF90
+-if test "x$MPICC"  = x && test "x$CC"  != x ; then ac_user_MPICC=$CC   ; fi
+-if test "x$MPICXX" = x && test "x$CXX" != x ; then ac_user_MPICXX=$CXX ; fi
+-if test "x$MPIF77" = x && test "x$F77" != x ; then ac_user_MPIF77=$F77 ; fi
+-if test "x$MPIF77" = x && test "x$FC"  != x ; then ac_user_MPIF77=$FC  ; fi
+-if test "x$MPIF90" = x && test "x$F90" != x ; then ac_user_MPIF90=$F90 ; fi
+-if test "x$MPIF90" = x && test "x$FC"  != x ; then ac_user_MPIF90=$FC  ; fi
++#if test "x$MPICC"  = x && test "x$CC"  != x ; then ac_user_MPICC=$CC   ; fi
++#if test "x$MPICXX" = x && test "x$CXX" != x ; then ac_user_MPICXX=$CXX ; fi
++#if test "x$MPIF77" = x && test "x$F77" != x ; then ac_user_MPIF77=$F77 ; fi
++#if test "x$MPIF77" = x && test "x$FC"  != x ; then ac_user_MPIF77=$FC  ; fi
++#if test "x$MPIF90" = x && test "x$F90" != x ; then ac_user_MPIF90=$F90 ; fi
++#if test "x$MPIF90" = x && test "x$FC"  != x ; then ac_user_MPIF90=$FC  ; fi
  
- 
- 
--if test "x$MPICC"  = x && test "x$CC"  != x ; then MPICC=$CC   ; fi
--if test "x$MPICXX" = x && test "x$CXX" != x ; then MPICXX=$CXX ; fi
--if test "x$MPIF77" = x && test "x$F77" != x ; then MPIF77=$F77 ; fi
--if test "x$MPIF77" = x && test "x$FC"  != x ; then MPIF77=$FC  ; fi
--if test "x$MPIF90" = x && test "x$F90" != x ; then MPIF90=$F90 ; fi
--if test "x$MPIF90" = x && test "x$FC"  != x ; then MPIF90=$FC  ; fi
-+#if test "x$MPICC"  = x && test "x$CC"  != x ; then MPICC=$CC   ; fi
-+#if test "x$MPICXX" = x && test "x$CXX" != x ; then MPICXX=$CXX ; fi
-+#if test "x$MPIF77" = x && test "x$F77" != x ; then MPIF77=$F77 ; fi
-+#if test "x$MPIF77" = x && test "x$FC"  != x ; then MPIF77=$FC  ; fi
-+#if test "x$MPIF90" = x && test "x$F90" != x ; then MPIF90=$F90 ; fi
-+#if test "x$MPIF90" = x && test "x$FC"  != x ; then MPIF90=$FC  ; fi
- 
- CANDIDATE_MPICC="${MPICC} mpicc"
- CANDIDATE_MPICXX="${MPICXX} mpicxx mpic++ mpiCC"
+ CANDIDATE_MPICC="${MPICC} mpicc mpicc_r"
+ CANDIDATE_MPICXX="${MPICXX} mpicxx mpic++ mpiCC mpcxx mpc++ mpicxx_r mpiCC_r mpcxx_r mpic++_r mpc++_r"
diff --git a/science/pnetcdf/files/patch-macros.make.in b/science/pnetcdf/files/patch-macros.make.in
deleted file mode 100644
index 2fd545ab7943..000000000000
--- a/science/pnetcdf/files/patch-macros.make.in
+++ /dev/null
@@ -1,11 +0,0 @@
---- macros.make.in.orig	2016-12-28 17:02:41 UTC
-+++ macros.make.in
-@@ -27,7 +27,7 @@
- INCDIR		= $(DESTDIR)/$(prefix)/include
- LIBDIR		= $(DESTDIR)/$(prefix)/lib
- BINDIR		= $(DESTDIR)/$(prefix)/bin
--MANDIR		= $(DESTDIR)/$(prefix)/share/man
-+MANDIR		= $(DESTDIR)/$(prefix)/man
- else
- INCDIR		= $(prefix)/include
- LIBDIR		= $(prefix)/lib
diff --git a/science/pnetcdf/pkg-descr b/science/pnetcdf/pkg-descr
index 0517d337d6b3..9b89f6d5248d 100644
--- a/science/pnetcdf/pkg-descr
+++ b/science/pnetcdf/pkg-descr
@@ -5,4 +5,5 @@ However, it does so in a serial manner, making it difficult to achieve high I/O
 performance. By making some small changes to the API specified by NetCDF, we can
 use MPI-IO and its collective operations.
 
-WWW: https://trac.mcs.anl.gov/projects/parallel-netcdf
+WWW: https://parallel-netcdf.github.io/
+WWW: https://github.com/Parallel-NetCDF/PnetCDF
diff --git a/science/pnetcdf/pkg-plist b/science/pnetcdf/pkg-plist
index 0c10d6ebc645..717a3894fb82 100644
--- a/science/pnetcdf/pkg-plist
+++ b/science/pnetcdf/pkg-plist
@@ -1,8 +1,9 @@
+bin/cdfdiff
 bin/ncmpidiff
 bin/ncmpidump
 bin/ncmpigen
-bin/ncmpivalid
 bin/ncoffsets
+bin/ncvalidator
 bin/pnetcdf-config
 bin/pnetcdf_version
 include/pnetcdf
@@ -11,11 +12,12 @@ include/pnetcdf.inc
 include/pnetcdf.mod
 lib/libpnetcdf.a
 libdata/pkgconfig/pnetcdf.pc
+man/man1/cdfdiff.1.gz
 man/man1/ncmpidiff.1.gz
 man/man1/ncmpidump.1.gz
 man/man1/ncmpigen.1.gz
-man/man1/ncmpivalid.1.gz
 man/man1/ncoffsets.1.gz
+man/man1/ncvalidator.1.gz
 man/man1/pnetcdf_version.1.gz
 man/man3/pnetcdf.3.gz
 man/man3/pnetcdf_f77.3.gz