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(8.16.1/8.16.1) with ESMTP id 20RKSDfr024141; Thu, 27 Jan 2022 20:28:13 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 20RKSDlg024140; Thu, 27 Jan 2022 20:28:13 GMT (envelope-from git) Date: Thu, 27 Jan 2022 20:28:13 GMT Message-Id: <202201272028.20RKSDlg024140@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 96fe8f7ab1ef - main - science/nest: Update 3.1 -> 3.2 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 96fe8f7ab1ef31c13cf71d79b6f8d15466544c9a Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1643315294; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=sh31tVowqEqKTHhyAB1i3Y2naNyvQW7SDUeL1oevaOg=; b=YukgRKnQ7tylSEU/KekBesl640z9UQnaBUn39bGflDkc6jH6FBYZaJaQ/B8teKwTSsm0O3 ZT32HzHSTI2R1U+HcrC3Gk0F1oE4ShorFRSAn12SfqSc5h0vh06OzJw2yTEBjtQMSe0J5W cuCKm39RKtxNE+fxyplBa7ch+dmIhw0tA2t4TnV2QfkU23vtOazYhnh7TZ/LS4XlCzh79a Z2bU08aSOJKk+fZ3oH3tR7xEAd0LlWtdIsspigmbWomUMi77vSE5jWMGK1mMZ7QrJr+pNJ joFPS0u+Utay7E3wgABw9hn9UCfF8It4WmAZHpAahocYmUZz8ajBRyuobhovcw== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1643315294; a=rsa-sha256; cv=none; b=uva7A+ReKsrjKcvRQAm6DK4Uut65C5SlWzA6iJOyPvv21zhmVxI/uYaikhRR0khl6eaaNX ZHVNyLSAnQ/nJShsG1YFuurf2Al9WfmV6P2Ghoj+6LEtUPjkbXzZQkm66OMCIOv5LGsQ8B yElzRMtWJAhFQX5C/5MyRb06uO9aIzSZY5Jp/EVA7XDVtb3JASHE4pi0a3ZrqWS1uHUTN1 ifNTljC/YoBQKBIB/PVyQMyw7jY2zYs5TAW0D7WwUl8vRp4qppdV95EspCeiE5rgui6HPt URO6Rh5qTlrHMY4UkFttbQ0B2z6htl9nUg/C4wfSI505pfJE8px36zgFIKUMyQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=96fe8f7ab1ef31c13cf71d79b6f8d15466544c9a commit 96fe8f7ab1ef31c13cf71d79b6f8d15466544c9a Author: Yuri Victorovich AuthorDate: 2022-01-27 20:15:50 +0000 Commit: Yuri Victorovich CommitDate: 2022-01-27 20:27:58 +0000 science/nest: Update 3.1 -> 3.2 Reported by: portscout --- science/nest/Makefile | 7 +- science/nest/distinfo | 6 +- science/nest/files/patch-CMakeLists.txt | 19 ++- .../nest/files/patch-cmake_ProcessOptions.cmake | 25 ++- science/nest/pkg-plist | 169 +-------------------- 5 files changed, 45 insertions(+), 181 deletions(-) diff --git a/science/nest/Makefile b/science/nest/Makefile index 01008b721fbd..5c3f17e9cebf 100644 --- a/science/nest/Makefile +++ b/science/nest/Makefile @@ -1,7 +1,6 @@ PORTNAME= nest DISTVERSIONPREFIX= v -DISTVERSION= 3.1 -PORTREVISION= 1 +DISTVERSION= 3.2 CATEGORIES= science biology # NEST is used in neuroscience MAINTAINER= yuri@FreeBSD.org @@ -23,7 +22,7 @@ USE_LDCONFIG= yes USE_GITHUB= yes GH_PROJECT= nest-simulator -SHEBANG_FILES= extras/nest-server extras/nest-server-mpi testsuite/do_tests.sh +SHEBANG_FILES= bin/nest-server bin/nest-server-mpi testsuite/do_tests.sh OPTIONS_DEFINE= PYTHON DOCS OPTIONS_DEFAULT= PYTHON @@ -31,7 +30,7 @@ OPTIONS_SUB= yes PYTHON_CMAKE_BOOL= BUILD_PYTHON PYTHON_USE= python=cython -PYTHON_CMAKE_ON= -DCYTHON_EXECUTABLE:STRING=${PREFIX}/bin/cython-${PYTHON_VER} +PYTHON_CMAKE_ON= -DFREEBSD_PYTHON_VER:STRING=${PYTHON_VER} -DCYTHON_EXECUTABLE:STRING=${PREFIX}/bin/cython-${PYTHON_VER} PORTDOCS= * diff --git a/science/nest/distinfo b/science/nest/distinfo index 58939e8d2162..e7aad6677eb6 100644 --- a/science/nest/distinfo +++ b/science/nest/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1634790045 -SHA256 (nest-nest-simulator-v3.1_GH0.tar.gz) = 5c11dd6b451c4c6bf93037bf29d5231c6c75a0e1a8863344f6fb9bb225f279ca -SIZE (nest-nest-simulator-v3.1_GH0.tar.gz) = 12028051 +TIMESTAMP = 1643310018 +SHA256 (nest-nest-simulator-v3.2_GH0.tar.gz) = 583d5725882ad5e8fd4fc7ffab425da97cbbb91fadbc327e940c184e8892b958 +SIZE (nest-nest-simulator-v3.2_GH0.tar.gz) = 10992802 diff --git a/science/nest/files/patch-CMakeLists.txt b/science/nest/files/patch-CMakeLists.txt index 7f7fc651d7b8..c77579033a51 100644 --- a/science/nest/files/patch-CMakeLists.txt +++ b/science/nest/files/patch-CMakeLists.txt @@ -1,6 +1,6 @@ ---- CMakeLists.txt.orig 2021-09-15 13:04:13 UTC +--- CMakeLists.txt.orig 2022-01-21 18:01:36 UTC +++ CMakeLists.txt -@@ -92,7 +92,7 @@ set( CMAKE_INSTALL_DATADIR "share/${PROJECT_NAME}" CAC +@@ -100,7 +100,7 @@ set( CMAKE_INSTALL_DATADIR "share/${PROJECT_NAME}" CAC ################################################################################ # needed for pynest test suite @@ -9,7 +9,7 @@ find_program( NOSETESTS NAMES nosetests ) endif () -@@ -194,7 +194,7 @@ message("-- NEST version: ${NEST_VERSION_STRING}") +@@ -202,7 +202,7 @@ message("-- NEST version: ${NEST_VERSION_STRING}") enable_testing() set( TEST_OPTS "" ) @@ -18,22 +18,21 @@ set( TEST_OPTS "${TEST_OPTS};--with-python=${PYTHON}" ) endif () -@@ -223,8 +223,12 @@ add_custom_target( installcheck +@@ -231,9 +231,13 @@ add_custom_target( installcheck ################## Define Subdirectories here ################## ################################################################################ --add_subdirectory( doc ) --add_subdirectory( examples ) +if (INSTALL_DOCS) -+ add_subdirectory( doc ) + add_subdirectory( doc ) +endif() + add_subdirectory( bin ) +if (INSTALL_EXAMPLES) -+ add_subdirectory( examples ) + add_subdirectory( examples ) +endif() - add_subdirectory( extras ) + add_subdirectory( build_support ) add_subdirectory( lib ) add_subdirectory( libnestutil ) -@@ -234,7 +238,7 @@ add_subdirectory( nest ) +@@ -243,7 +247,7 @@ add_subdirectory( nest ) add_subdirectory( nestkernel ) add_subdirectory( thirdparty ) add_subdirectory( testsuite ) diff --git a/science/nest/files/patch-cmake_ProcessOptions.cmake b/science/nest/files/patch-cmake_ProcessOptions.cmake index 979ff8fc6835..1282cb5c2b40 100644 --- a/science/nest/files/patch-cmake_ProcessOptions.cmake +++ b/science/nest/files/patch-cmake_ProcessOptions.cmake @@ -1,6 +1,27 @@ ---- cmake/ProcessOptions.cmake.orig 2021-10-21 05:42:49 UTC +--- cmake/ProcessOptions.cmake.orig 2022-01-21 18:01:36 UTC +++ cmake/ProcessOptions.cmake -@@ -421,7 +421,7 @@ function( NEST_PROCESS_WITH_PYTHON ) +@@ -392,9 +392,9 @@ function( NEST_PROCESS_WITH_PYTHON ) + elseif ( ${with-python} STREQUAL "ON" ) + + # Localize the Python interpreter and ABI +- find_package( Python 3.8 QUIET COMPONENTS Interpreter Development.Module ) ++ find_package( Python ${FREEBSD_PYTHON_VER} EXACT QUIET COMPONENTS Interpreter Development.Module ) + if ( NOT Python_FOUND ) +- find_package( Python 3.8 REQUIRED Interpreter Development ) ++ find_package( Python ${FREEBSD_PYTHON_VER} EXACT REQUIRED Interpreter Development ) + string( CONCAT PYABI_WARN "Could not locate Python ABI" + ", using shared libraries and header file instead." + " Please clear your CMake cache and build folder and verify that CMake" +@@ -402,7 +402,7 @@ function( NEST_PROCESS_WITH_PYTHON ) + ) + message( WARNING "${PYABI_WARN}") + else() +- find_package( Python 3.8 REQUIRED Interpreter Development.Module ) ++ find_package( Python ${FREEBSD_PYTHON_VER} EXACT REQUIRED Interpreter Development.Module ) + endif() + + if ( Python_FOUND ) +@@ -432,7 +432,7 @@ function( NEST_PROCESS_WITH_PYTHON ) set( Python_INCLUDE_DIRS "${Python_INCLUDE_DIRS}" PARENT_SCOPE ) set( Python_LIBRARIES "${Python_LIBRARIES}" PARENT_SCOPE ) diff --git a/science/nest/pkg-plist b/science/nest/pkg-plist index 884e8c3e70ae..21eb7381cd56 100644 --- a/science/nest/pkg-plist +++ b/science/nest/pkg-plist @@ -165,7 +165,6 @@ include/nest/layer_impl.h include/nest/lin_rate.h include/nest/lockptr.h include/nest/lockptrdatum.h -include/nest/lockptrdatum_impl.h include/nest/logging.h include/nest/logging_event.h include/nest/logging_manager.h @@ -212,7 +211,6 @@ include/nest/noise_generator.h include/nest/ntree.h include/nest/ntree_impl.h include/nest/numericdatum.h -include/nest/numericdatum_impl.h include/nest/numerics.h include/nest/oosupport.h include/nest/parameter.h @@ -316,7 +314,6 @@ include/nest/step_rate_generator.h include/nest/stimulation_backend.h include/nest/stimulation_device.h include/nest/stopwatch.h -include/nest/streamers.h include/nest/string_utils.h include/nest/stringdatum.h include/nest/structural_plasticity_node.h @@ -361,8 +358,6 @@ lib/nest/libnestutil.so lib/nest/libsli.so lib/nest/libsli_readline.so 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