git: 322c0325932a - main - science/votca: Update 2021.2-18560 -> 2022

From: Yuri Victorovich <yuri_at_FreeBSD.org>
Date: Mon, 24 Jan 2022 21:28:17 UTC
The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=322c0325932a5a2f6ed89821f82f27a3edddef8f

commit 322c0325932a5a2f6ed89821f82f27a3edddef8f
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2022-01-24 21:27:12 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2022-01-24 21:28:00 +0000

    science/votca: Update 2021.2-18560 -> 2022
    
    Reported by:    portscout
---
 science/votca/Makefile  |   15 +-
 science/votca/distinfo  |   16 +-
 science/votca/pkg-plist | 1786 +----------------------------------------------
 3 files changed, 11 insertions(+), 1806 deletions(-)

diff --git a/science/votca/Makefile b/science/votca/Makefile
index 8a8df90d646f..6a44d3ab2fe0 100644
--- a/science/votca/Makefile
+++ b/science/votca/Makefile
@@ -1,7 +1,6 @@
 PORTNAME=	votca
 DISTVERSIONPREFIX=	v
-DISTVERSION=	2021.2-18560
-DISTVERSIONSUFFIX=	-gfbe18d971
+DISTVERSION=	2022
 CATEGORIES=	science
 
 MAINTAINER=	yuri@FreeBSD.org
@@ -33,20 +32,14 @@ TEST_DEPENDS=	${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR}
 
 USES=		cmake compiler:c++14-lang eigen:3 perl5 pkgconfig python:run \
 		shebangfix
-USE_LDCONFIG=	yes
-
 USE_GITHUB=	yes
-GH_TUPLE=	\
-		votca:tools:9c102e0:tools/tools \
-		votca:csg:da5c1dc:csg/csg \
-		votca:xtp:2a31d70:xtp/xtp \
-		votca:csg-tutorials:2b7b657:csg_tutorials/csg-tutorials \
-		votca:xtp-tutorials:8576616:xtp_tutorials/xtp-tutorials
+USE_LDCONFIG=	yes
 
 SHEBANG_GLOB=	*.sh *.pl *.py
 SHEBANG_FILES=	csg/scripts/csg_call.in csg/scripts/csg_inverse.in \
 		tools/scripts/votca_compare.in tools/scripts/votca_help2doc.in \
 		xtp/scripts/xtp_update_mapfile.in xtp/scripts/xtp_basisset.in xtp/share/benchmark/xtp_benchmark.in xtp/scripts/xtp_autogen_mapping.in \
+		xtp/scripts/xtp_modify_jobfile.in \
 		xtp/scripts/xtp_qmmm2qm.in
 
 CMAKE_ON=	BUILD_XTP
@@ -59,7 +52,7 @@ OPTIONS_SUB=		yes
 APPS_DESC=		Build applications
 APPS_CMAKE_BOOL=	BUILD_CSGAPPS
 
-do-test: # 6 testscases are known to fail: https://github.com/votca/votca/issues/760
+do-test: # 6 testscases are known to fail: https://github.com/votca/votca/issues/760 ; https://github.com/votca/votca/issues/957
 	@cd ${BUILD_WRKSRC} && \
 		${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -DENABLE_TESTING:BOOL=ON ${CMAKE_SOURCE_PATH} && \
 		${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \
diff --git a/science/votca/distinfo b/science/votca/distinfo
index 6d8bf81e317e..aa8678ae2a3a 100644
--- a/science/votca/distinfo
+++ b/science/votca/distinfo
@@ -1,13 +1,3 @@
-TIMESTAMP = 1632873512
-SHA256 (votca-votca-v2021.2-18560-gfbe18d971_GH0.tar.gz) = b95e8705c4e7011ce824f9808926121dfe6b8c4b9cadfdafc49ea64738567053
-SIZE (votca-votca-v2021.2-18560-gfbe18d971_GH0.tar.gz) = 61676419
-SHA256 (votca-tools-9c102e0_GH0.tar.gz) = 56bca822b17c1480949092b029e56f85a42a3538efed82267f86817f22a466d5
-SIZE (votca-tools-9c102e0_GH0.tar.gz) = 118104
-SHA256 (votca-csg-da5c1dc_GH0.tar.gz) = 5cbd83be727c0667b41059305003d17e63c9988ffea50053f26b29454aa66c11
-SIZE (votca-csg-da5c1dc_GH0.tar.gz) = 4321436
-SHA256 (votca-xtp-2a31d70_GH0.tar.gz) = 3fc4847b13ed7de3481338597381aac4b0b4ce403b32397dd29f7dcac02c7d74
-SIZE (votca-xtp-2a31d70_GH0.tar.gz) = 2249718
-SHA256 (votca-csg-tutorials-2b7b657_GH0.tar.gz) = 07445122641bd00d44099cd32f4dc5162115f48f3e79bf405e536d346ac68d0a
-SIZE (votca-csg-tutorials-2b7b657_GH0.tar.gz) = 5986504
-SHA256 (votca-xtp-tutorials-8576616_GH0.tar.gz) = b9126b21c08c2fbede1edfc2da926aa319475cecd101f36f2522fad8bdc9c046
-SIZE (votca-xtp-tutorials-8576616_GH0.tar.gz) = 46192744
+TIMESTAMP = 1643051357
+SHA256 (votca-votca-v2022_GH0.tar.gz) = eac5e34bd6304780ddb82edcd805c4ea7ac3f13224e61a339f7836e06c3fabaa
+SIZE (votca-votca-v2022_GH0.tar.gz) = 61688862
diff --git a/science/votca/pkg-plist b/science/votca/pkg-plist
index 2a81235a8aee..b40a1a843190 100644
--- a/science/votca/pkg-plist
+++ b/science/votca/pkg-plist
@@ -26,6 +26,7 @@ bin/votca_property
 bin/xtp_autogen_mapping
 bin/xtp_basisset
 bin/xtp_map
+bin/xtp_modify_jobfile
 bin/xtp_parallel
 bin/xtp_qmmm2qm
 bin/xtp_run
@@ -308,6 +309,7 @@ man/man1/votca_property.1.gz
 man/man1/xtp_autogen_mapping.1.gz
 man/man1/xtp_basisset.1.gz
 man/man1/xtp_map.1.gz
+man/man1/xtp_modify_jobfile.1.gz
 man/man1/xtp_parallel.1.gz
 man/man1/xtp_qmmm2qm.1.gz
 man/man1/xtp_run.1.gz
@@ -328,515 +330,6 @@ man/man7/votca-tools.7.gz
 %%DATADIR%%/csg-tutorials/LJ1-LJ2/imc/table.xvg
 %%DATADIR%%/csg-tutorials/LJ1-LJ2/imc/topol.top
 %%DATADIR%%/csg-tutorials/README.rst
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/LJ1-LJ2/imc/LJ1-LJ1.dist.tgt
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/LJ1-LJ2/imc/LJ1-LJ2.dist.tgt
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/LJ1-LJ2/imc/LJ2-LJ2.dist.tgt
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/LJ1-LJ2/imc/conf.gro
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/LJ1-LJ2/imc/grompp.mdp
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/LJ1-LJ2/imc/index.ndx
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/LJ1-LJ2/imc/run.sh
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/LJ1-LJ2/imc/settings.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/LJ1-LJ2/imc/settings_pre.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/LJ1-LJ2/imc/svd.py
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/LJ1-LJ2/imc/table.xvg
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/LJ1-LJ2/imc/topol.top
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/README.rst
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/guide/README.rst
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/atomistic/Extract_Energies.sh
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/atomistic/boltzmann_cmds
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/atomistic/conf.gro
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/atomistic/grompp.mdp
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/atomistic/hexane.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/atomistic/run.sh
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/atomistic/run_Boltzmann.sh
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/atomistic/settings.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/atomistic/topol.top
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/force_matching/fmatch.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/force_matching/hexane.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/force_matching/run.sh
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/hybrid_force_matching/Extract_Energies.sh
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/hybrid_force_matching/README
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/hybrid_force_matching/fmatch.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/hybrid_force_matching/hexane.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/hybrid_force_matching/run.sh
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/hybrid_force_matching/topol.top
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_all/A-A.dist.tgt
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_all/A-B.dist.tgt
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_all/B-B.dist.tgt
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_all/Extract_Energies.sh
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_all/angle.dist.tgt
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_all/bond.dist.tgt
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_all/conf.gro
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_all/grompp.mdp
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_all/hexane_cg.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_all/index.ndx
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_all/run.sh
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_all/settings.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_all/table.xvg
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_all/topol.top
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_nonbonded/A-A.dist.tgt
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_nonbonded/A-B.dist.tgt
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_nonbonded/B-B.dist.tgt
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_nonbonded/Extract_Energies.sh
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_nonbonded/angle.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_nonbonded/boltzmann_cmds
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_nonbonded/bond.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_nonbonded/conf.gro
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_nonbonded/grompp.mdp
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_nonbonded/index.ndx
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_nonbonded/run.sh
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_nonbonded/run_Boltzmann.sh
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_nonbonded/settings.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_nonbonded/table.xvg
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_nonbonded/table_a1.xvg
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_nonbonded/table_b1.xvg
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/hexane/ibi_nonbonded/topol.top
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/atomistic/conf.gro
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/atomistic/grompp.mdp
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/atomistic/methanol.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/atomistic/methanol_opls.itp
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/atomistic/run.sh
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/atomistic/settings.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/atomistic/topol.top
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/atomistic/water.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/re/ME-ME.aa.rdf
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/re/ME-ME.param.init
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/re/ME-WT.aa.rdf
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/re/ME-WT.param.init
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/re/WT-WT.aa.rdf
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/re/WT-WT.param.init
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/re/conf.gro
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/re/grompp.mdp
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/re/index.ndx
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/re/run.sh
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/re/settings.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/re/table.xvg
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/re/topol.top
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/simplex/ME-ME.aa.rdf
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/simplex/ME-ME.simplex.in
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/simplex/ME-WT.aa.rdf
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/simplex/ME-WT.simplex.in
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/simplex/WT-WT.aa.rdf
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/simplex/WT-WT.simplex.in
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/simplex/conf.gro
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/simplex/function_CKDg_ME_ME.in
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/simplex/function_CKDg_ME_WT.in
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/simplex/function_CKDg_WT_WT.in
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/simplex/function_rdf_weight.in
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/simplex/grompp.mdp
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/simplex/grompp.prep.mdp
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/simplex/index.ndx
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/simplex/run.sh
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/simplex/settings.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/simplex/table.xvg
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.062/simplex/topol.top
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.5/atomistic/conf.gro
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.5/atomistic/grompp.mdp
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.5/atomistic/methanol.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.5/atomistic/methanol_opls.itp
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.5/atomistic/run.sh
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.5/atomistic/settings.xml
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.5/atomistic/topol.top
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.5/atomistic/water.xml
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-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.5/re/ME-ME.param.init
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-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.5/re/grompp.mdp
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-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.5/re/topol.top
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.5/simplex/ME-ME.aa.rdf
-%%DATADIR%%/csg-tutorials/csg-tutorials-2b7b657/methanol-water/X_0.5/simplex/ME-ME.simplex.in
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