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Wed, 5 Jan 2022 23:01:06 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 205N16b6047708; Wed, 5 Jan 2022 23:01:06 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 205N16DY047707; Wed, 5 Jan 2022 23:01:06 GMT (envelope-from git) Date: Wed, 5 Jan 2022 23:01:06 GMT Message-Id: <202201052301.205N16DY047707@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Johannes M Dieterich Subject: git: 1571a428a0e2 - main - biology/molden: update to 6.7 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; 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mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jmd: URL: https://cgit.FreeBSD.org/ports/commit/?id=1571a428a0e2ca81bbd5609eee2e41d8eed5b5c0 commit 1571a428a0e2ca81bbd5609eee2e41d8eed5b5c0 Author: Johannes M Dieterich AuthorDate: 2022-01-05 22:59:11 +0000 Commit: Johannes M Dieterich CommitDate: 2022-01-05 23:01:00 +0000 biology/molden: update to 6.7 PR: 238858 Reported by: yuri@ --- biology/molden/Makefile | 47 +- biology/molden/distinfo | 6 +- biology/molden/files/patch-ambfor-makefile | 28 - biology/molden/files/patch-surf-Makefile | 789 ----------------------------- biology/molden/files/patch-xwin.c | 32 -- biology/molden/pkg-descr | 36 +- 6 files changed, 48 insertions(+), 890 deletions(-) diff --git a/biology/molden/Makefile b/biology/molden/Makefile index 101b12f668b9..cc945bed3a96 100644 --- a/biology/molden/Makefile +++ b/biology/molden/Makefile @@ -1,52 +1,52 @@ # Created by: Ryo MIYAMOTO PORTNAME= molden -DISTVERSION= 5.8.2 -PORTREVISION= 4 +DISTVERSION= 6.7 PORTEPOCH= 1 CATEGORIES= biology MASTER_SITES= ftp://ftp.cmbi.umcn.nl/pub/molgraph/molden/ -DISTNAME= ${PORTNAME}${PORTVERSION} +DISTNAME= ${PORTNAME}${DISTVERSION} MAINTAINER= jmd@FreeBSD.org COMMENT= Display molecular orbitals and electron densities in 2D and 3D LICENSE= Molden -LICENSE_NAME= Molden +LICENSE_NAME= Molden License LICENSE_FILE= ${WRKSRC}/CopyRight -# free for academic, non profit usage; do not re-distribute source and executable. -LICENSE_PERMS= auto-accept +LICENSE_PERMS= auto-accept dist-mirror pkg-mirror # free for academic, non profit use -WRKSRC= ${WRKDIR}/${PORTNAME}${PORTVERSION:R} +BUILD_DEPENDS= makedepend:devel/makedepend USES= fortran gl gmake xorg -USE_XORG= x11 +USE_XORG= x11 xmu USE_GL= gl glu + MAKEFILE= makefile -MAKE_JOBS_UNSAFE=yes CFLAGS+= -D${OPSYS:tu} -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 \ -I${LOCALBASE}/include -Wno-return-type PORTDOCS= * PORTDATA= * -PLIST_FILES= bin/ambfor bin/gmolden bin/molden bin/surf + +PLIST_FILES= bin/ambfor \ + bin/ambmd \ + bin/gmolden \ + bin/molden \ + bin/surf PORTSCOUT= limit:^5\.0\. OPTIONS_DEFINE= DATA DOCS OPTIONS_DEFAULT= DATA -post-patch: - @${REINPLACE_CMD} -e \ - 's|^CC |#CC | ; \ - s|^FC |#FC | ; \ - s|/usr/X11R6|${LOCALBASE}| ; \ - s|$$(LIBS)|$$(LIBS) $$(LDFLAGS)| ; \ - s|-lXmu|| ; \ - /depend/s|^|#|' ${WRKSRC}/makefile +post-extract: + # remove object modules + @${FIND} ${WRKSRC} -name "*.o" | ${XARGS} ${RM} + # remove pre-built executables + @${RM} ${WRKSRC}/bin/* -post-configure: +xpost-configure: @${ECHO_MSG} "********************" @${ECHO_MSG} "** If you want to use a larger MOLDEN," @${ECHO_MSG} "** edit change_parameter.sh and run it," @@ -54,11 +54,8 @@ post-configure: @${ECHO_MSG} "********************" do-install: -.for i in molden gmolden - (cd ${WRKSRC} && ${INSTALL_PROGRAM} ${i} ${STAGEDIR}${PREFIX}/bin) -.endfor -.for i in ambfor surf - (cd ${WRKSRC}/${i} && ${INSTALL_PROGRAM} ${i} ${STAGEDIR}/${PREFIX}/bin) +.for e in molden gmolden ambfor ambmd surf + ${INSTALL_PROGRAM} ${WRKSRC}/bin/${e} ${STAGEDIR}${PREFIX}/bin .endfor do-install-DATA-on: @@ -69,7 +66,7 @@ do-install-DATA-on: do-install-DOCS-on: ${MKDIR} ${STAGEDIR}${DOCSDIR} - (cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}) + cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR} .include diff --git a/biology/molden/distinfo b/biology/molden/distinfo index f5bedab276c4..b3c287258481 100644 --- a/biology/molden/distinfo +++ b/biology/molden/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1541594934 -SHA256 (molden5.8.2.tar.gz) = 65a24db9e80b4fb6038cc1e57c7d6e2457414812c9389bc651af7cb33f01dbe9 -SIZE (molden5.8.2.tar.gz) = 5770998 +TIMESTAMP = 1639879141 +SHA256 (molden6.7.tar.gz) = ebd73e8d95271eb82a1464a7eab28a042662483bbff6e6dcc7db0d1c9b2e4432 +SIZE (molden6.7.tar.gz) = 11600372 diff --git a/biology/molden/files/patch-ambfor-makefile b/biology/molden/files/patch-ambfor-makefile deleted file mode 100644 index 5b71286b335f..000000000000 --- a/biology/molden/files/patch-ambfor-makefile +++ /dev/null @@ -1,28 +0,0 @@ ---- ambfor/makefile.orig 2015-05-02 19:49:10 UTC -+++ ambfor/makefile -@@ -12,12 +12,12 @@ - # - # - --CFLAGS = -c -g ${EXT} -+CFLAGS += -c - #FC = g77 --FC = gfortran --FFLAGS = -c -g -ffast-math -funroll-loops -O3 -+#FC = gfortran -+#FFLAGS = -c -g -ffast-math -funroll-loops -O3 - LIBS = -lm --LDR = ${FC} -g -+LDR = ${FC} - EXT := - - ifeq ($(uname), Darwin) -@@ -56,7 +56,7 @@ ambmd: md.o verlet.o qvdw.o allocmd.o $( - $(LDR) -o ambmd md.o verlet.o qvdw.o allocmd.o $(OBJS) $(LIBS) - - ambfor.o: ambfor.f -- ${FC} -c -g -ffast-math -funroll-loops -o ambfor.o ambfor.f -+ ${FC} -c ${FFLAGS} -o ambfor.o ambfor.f - - allocmd.o: alloc.c - $(CC) $(CFLAGS) -DMD -c alloc.c -o allocmd.o diff --git a/biology/molden/files/patch-surf-Makefile b/biology/molden/files/patch-surf-Makefile deleted file mode 100644 index 94b6eea01746..000000000000 --- a/biology/molden/files/patch-surf-Makefile +++ /dev/null @@ -1,789 +0,0 @@ ---- surf/Makefile.orig 2015-05-02 19:48:48 UTC -+++ surf/Makefile -@@ -1,12 +1,8 @@ - # Compilation flags --#CC = cc --CC = cc - INCLUDE = -I. - #LINCLUDE = -lcurses -ltermcap -lm - LINCLUDE = -lm --OPT_CFLAGS = -O2 $(FLAGS) $(INCLUDE) - #CFLAGS = -g $(FLAGS) $(INCLUDE) --CFLAGS = -O2 $(FLAGS) $(INCLUDE) ${EXT} - - ifeq ($(uname), Darwin) - # -@@ -73,670 +69,117 @@ depend: $(DEPEND) - # DO NOT DELETE - - surf.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h --surf.o: /usr/include/sys/_symbol_aliasing.h --surf.o: /usr/include/sys/_posix_availability.h /usr/include/Availability.h --surf.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h --surf.o: /usr/include/sys/_types.h /usr/include/machine/_types.h --surf.o: /usr/include/i386/_types.h /usr/include/sys/_pthread/_pthread_types.h --surf.o: /usr/include/sys/_types/_va_list.h /usr/include/sys/_types/_size_t.h --surf.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h --surf.o: /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h --surf.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h --surf.o: /usr/include/math.h /usr/include/stdlib.h /usr/include/sys/wait.h --surf.o: /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h --surf.o: /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h --surf.o: /usr/include/machine/signal.h /usr/include/i386/signal.h --surf.o: /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h --surf.o: /usr/include/mach/i386/_structs.h --surf.o: /usr/include/sys/_pthread/_pthread_attr_t.h --surf.o: /usr/include/sys/_types/_sigaltstack.h --surf.o: /usr/include/sys/_types/_ucontext.h --surf.o: /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h --surf.o: /usr/include/sys/resource.h /usr/include/stdint.h --surf.o: /usr/include/sys/_types/_int8_t.h /usr/include/sys/_types/_int16_t.h --surf.o: /usr/include/sys/_types/_int32_t.h /usr/include/sys/_types/_int64_t.h --surf.o: /usr/include/_types/_uint8_t.h /usr/include/_types/_uint16_t.h --surf.o: /usr/include/_types/_uint32_t.h /usr/include/_types/_uint64_t.h --surf.o: /usr/include/sys/_types/_intptr_t.h --surf.o: /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h --surf.o: /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h --surf.o: /usr/include/machine/endian.h /usr/include/i386/endian.h --surf.o: /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h --surf.o: /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h --surf.o: /usr/include/sys/_types/_ct_rune_t.h --surf.o: /usr/include/sys/_types/_rune_t.h /usr/include/sys/_types/_wchar_t.h --surf.o: /usr/include/machine/types.h /usr/include/i386/types.h --surf.o: /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h --surf.o: /usr/include/string.h /usr/include/sys/_types/_rsize_t.h --surf.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h --surf.o: /usr/include/secure/_string.h /usr/include/sys/time.h --surf.o: /usr/include/sys/_types/_fd_def.h /usr/include/sys/_types/_timespec.h --surf.o: /usr/include/sys/_types/_time_t.h --surf.o: /usr/include/sys/_types/_suseconds_t.h --surf.o: /usr/include/sys/_types/_fd_setsize.h --surf.o: /usr/include/sys/_types/_fd_set.h /usr/include/sys/_types/_fd_clr.h --surf.o: /usr/include/sys/_types/_fd_isset.h --surf.o: /usr/include/sys/_types/_fd_zero.h /usr/include/sys/_types/_fd_copy.h --surf.o: /usr/include/time.h /usr/include/sys/_types/_clock_t.h --surf.o: /usr/include/sys/_select.h linalg.h -+surf.o: /usr/include/sys/_null.h /usr/include/sys/_types.h -+surf.o: /usr/include/machine/_types.h /usr/include/math.h -+surf.o: /usr/include/machine/_limits.h /usr/include/stdlib.h -+surf.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h -+surf.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h -+surf.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h -+surf.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h -+surf.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h - io.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h --io.o: /usr/include/sys/_symbol_aliasing.h --io.o: /usr/include/sys/_posix_availability.h /usr/include/Availability.h --io.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h --io.o: /usr/include/sys/_types.h /usr/include/machine/_types.h --io.o: /usr/include/i386/_types.h /usr/include/sys/_pthread/_pthread_types.h --io.o: /usr/include/sys/_types/_va_list.h /usr/include/sys/_types/_size_t.h --io.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h --io.o: /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h --io.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h --io.o: /usr/include/math.h /usr/include/stdlib.h /usr/include/sys/wait.h --io.o: /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h --io.o: /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h --io.o: /usr/include/machine/signal.h /usr/include/i386/signal.h --io.o: /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h --io.o: /usr/include/mach/i386/_structs.h --io.o: /usr/include/sys/_pthread/_pthread_attr_t.h --io.o: /usr/include/sys/_types/_sigaltstack.h --io.o: /usr/include/sys/_types/_ucontext.h /usr/include/sys/_types/_sigset_t.h --io.o: /usr/include/sys/_types/_uid_t.h /usr/include/sys/resource.h --io.o: /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h --io.o: /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h --io.o: /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h --io.o: /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h --io.o: /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h --io.o: /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h --io.o: /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h --io.o: /usr/include/machine/endian.h /usr/include/i386/endian.h --io.o: /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h --io.o: /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h --io.o: /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h --io.o: /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h --io.o: /usr/include/i386/types.h /usr/include/sys/_types/_dev_t.h --io.o: /usr/include/sys/_types/_mode_t.h /usr/include/string.h --io.o: /usr/include/sys/_types/_rsize_t.h /usr/include/sys/_types/_errno_t.h --io.o: /usr/include/strings.h /usr/include/secure/_string.h --io.o: /usr/include/sys/time.h /usr/include/sys/_types/_fd_def.h --io.o: /usr/include/sys/_types/_timespec.h /usr/include/sys/_types/_time_t.h --io.o: /usr/include/sys/_types/_suseconds_t.h --io.o: /usr/include/sys/_types/_fd_setsize.h /usr/include/sys/_types/_fd_set.h --io.o: /usr/include/sys/_types/_fd_clr.h /usr/include/sys/_types/_fd_isset.h --io.o: /usr/include/sys/_types/_fd_zero.h /usr/include/sys/_types/_fd_copy.h --io.o: /usr/include/time.h /usr/include/sys/_types/_clock_t.h --io.o: /usr/include/sys/_select.h linalg.h -+io.o: /usr/include/sys/_null.h /usr/include/sys/_types.h -+io.o: /usr/include/machine/_types.h /usr/include/math.h -+io.o: /usr/include/machine/_limits.h /usr/include/stdlib.h -+io.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h -+io.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h -+io.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h -+io.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h -+io.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h - compute.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h --compute.o: /usr/include/sys/_symbol_aliasing.h --compute.o: /usr/include/sys/_posix_availability.h /usr/include/Availability.h --compute.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h --compute.o: /usr/include/sys/_types.h /usr/include/machine/_types.h --compute.o: /usr/include/i386/_types.h --compute.o: /usr/include/sys/_pthread/_pthread_types.h --compute.o: /usr/include/sys/_types/_va_list.h --compute.o: /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h --compute.o: /usr/include/sys/stdio.h /usr/include/sys/_types/_off_t.h --compute.o: /usr/include/sys/_types/_ssize_t.h /usr/include/secure/_stdio.h --compute.o: /usr/include/secure/_common.h /usr/include/math.h --compute.o: /usr/include/stdlib.h /usr/include/sys/wait.h --compute.o: /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h --compute.o: /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h --compute.o: /usr/include/machine/signal.h /usr/include/i386/signal.h --compute.o: /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h --compute.o: /usr/include/mach/i386/_structs.h --compute.o: /usr/include/sys/_pthread/_pthread_attr_t.h --compute.o: /usr/include/sys/_types/_sigaltstack.h --compute.o: /usr/include/sys/_types/_ucontext.h --compute.o: /usr/include/sys/_types/_sigset_t.h --compute.o: /usr/include/sys/_types/_uid_t.h /usr/include/sys/resource.h --compute.o: /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h --compute.o: /usr/include/sys/_types/_int16_t.h --compute.o: /usr/include/sys/_types/_int32_t.h --compute.o: /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h --compute.o: /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h --compute.o: /usr/include/_types/_uint64_t.h --compute.o: /usr/include/sys/_types/_intptr_t.h --compute.o: /usr/include/sys/_types/_uintptr_t.h --compute.o: /usr/include/_types/_intmax_t.h /usr/include/_types/_uintmax_t.h --compute.o: /usr/include/sys/_types/_timeval.h /usr/include/machine/endian.h --compute.o: /usr/include/i386/endian.h /usr/include/sys/_endian.h --compute.o: /usr/include/libkern/_OSByteOrder.h --compute.o: /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h --compute.o: /usr/include/sys/_types/_ct_rune_t.h --compute.o: /usr/include/sys/_types/_rune_t.h --compute.o: /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h --compute.o: /usr/include/i386/types.h /usr/include/sys/_types/_dev_t.h --compute.o: /usr/include/sys/_types/_mode_t.h /usr/include/string.h --compute.o: /usr/include/sys/_types/_rsize_t.h --compute.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h --compute.o: /usr/include/secure/_string.h /usr/include/sys/time.h --compute.o: /usr/include/sys/_types/_fd_def.h --compute.o: /usr/include/sys/_types/_timespec.h --compute.o: /usr/include/sys/_types/_time_t.h --compute.o: /usr/include/sys/_types/_suseconds_t.h --compute.o: /usr/include/sys/_types/_fd_setsize.h --compute.o: /usr/include/sys/_types/_fd_set.h --compute.o: /usr/include/sys/_types/_fd_clr.h --compute.o: /usr/include/sys/_types/_fd_isset.h --compute.o: /usr/include/sys/_types/_fd_zero.h --compute.o: /usr/include/sys/_types/_fd_copy.h /usr/include/time.h --compute.o: /usr/include/sys/_types/_clock_t.h /usr/include/sys/_select.h --compute.o: linalg.h chull.h dual.h -+compute.o: /usr/include/sys/_null.h /usr/include/sys/_types.h -+compute.o: /usr/include/machine/_types.h /usr/include/math.h -+compute.o: /usr/include/machine/_limits.h /usr/include/stdlib.h -+compute.o: /usr/include/string.h /usr/include/strings.h -+compute.o: /usr/include/sys/time.h /usr/include/sys/_timeval.h -+compute.o: /usr/include/sys/types.h /usr/include/machine/endian.h -+compute.o: /usr/include/sys/_pthreadtypes.h /usr/include/sys/select.h -+compute.o: /usr/include/sys/_sigset.h /usr/include/sys/timespec.h -+compute.o: /usr/include/time.h linalg.h chull.h dual.h - dual.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h --dual.o: /usr/include/sys/_symbol_aliasing.h --dual.o: /usr/include/sys/_posix_availability.h /usr/include/Availability.h --dual.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h --dual.o: /usr/include/sys/_types.h /usr/include/machine/_types.h --dual.o: /usr/include/i386/_types.h /usr/include/sys/_pthread/_pthread_types.h --dual.o: /usr/include/sys/_types/_va_list.h /usr/include/sys/_types/_size_t.h --dual.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h --dual.o: /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h --dual.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h --dual.o: /usr/include/math.h /usr/include/stdlib.h /usr/include/sys/wait.h --dual.o: /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h --dual.o: /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h --dual.o: /usr/include/machine/signal.h /usr/include/i386/signal.h --dual.o: /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h --dual.o: /usr/include/mach/i386/_structs.h --dual.o: /usr/include/sys/_pthread/_pthread_attr_t.h --dual.o: /usr/include/sys/_types/_sigaltstack.h --dual.o: /usr/include/sys/_types/_ucontext.h --dual.o: /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h --dual.o: /usr/include/sys/resource.h /usr/include/stdint.h --dual.o: /usr/include/sys/_types/_int8_t.h /usr/include/sys/_types/_int16_t.h --dual.o: /usr/include/sys/_types/_int32_t.h /usr/include/sys/_types/_int64_t.h --dual.o: /usr/include/_types/_uint8_t.h /usr/include/_types/_uint16_t.h --dual.o: /usr/include/_types/_uint32_t.h /usr/include/_types/_uint64_t.h --dual.o: /usr/include/sys/_types/_intptr_t.h --dual.o: /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h --dual.o: /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h --dual.o: /usr/include/machine/endian.h /usr/include/i386/endian.h --dual.o: /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h --dual.o: /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h --dual.o: /usr/include/sys/_types/_ct_rune_t.h --dual.o: /usr/include/sys/_types/_rune_t.h /usr/include/sys/_types/_wchar_t.h --dual.o: /usr/include/machine/types.h /usr/include/i386/types.h --dual.o: /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h --dual.o: /usr/include/string.h /usr/include/sys/_types/_rsize_t.h --dual.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h --dual.o: /usr/include/secure/_string.h /usr/include/sys/time.h --dual.o: /usr/include/sys/_types/_fd_def.h /usr/include/sys/_types/_timespec.h --dual.o: /usr/include/sys/_types/_time_t.h --dual.o: /usr/include/sys/_types/_suseconds_t.h --dual.o: /usr/include/sys/_types/_fd_setsize.h --dual.o: /usr/include/sys/_types/_fd_set.h /usr/include/sys/_types/_fd_clr.h --dual.o: /usr/include/sys/_types/_fd_isset.h --dual.o: /usr/include/sys/_types/_fd_zero.h /usr/include/sys/_types/_fd_copy.h --dual.o: /usr/include/time.h /usr/include/sys/_types/_clock_t.h --dual.o: /usr/include/sys/_select.h linalg.h dual.h chull.h -+dual.o: /usr/include/sys/_null.h /usr/include/sys/_types.h -+dual.o: /usr/include/machine/_types.h /usr/include/math.h -+dual.o: /usr/include/machine/_limits.h /usr/include/stdlib.h -+dual.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h -+dual.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h -+dual.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h -+dual.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h -+dual.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h dual.h -+dual.o: chull.h - utils.o: surf.h /usr/include/stdio.h /usr/include/sys/cdefs.h --utils.o: /usr/include/sys/_symbol_aliasing.h --utils.o: /usr/include/sys/_posix_availability.h /usr/include/Availability.h --utils.o: /usr/include/AvailabilityInternal.h /usr/include/_types.h --utils.o: /usr/include/sys/_types.h /usr/include/machine/_types.h --utils.o: /usr/include/i386/_types.h --utils.o: /usr/include/sys/_pthread/_pthread_types.h --utils.o: /usr/include/sys/_types/_va_list.h /usr/include/sys/_types/_size_t.h --utils.o: /usr/include/sys/_types/_null.h /usr/include/sys/stdio.h --utils.o: /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h --utils.o: /usr/include/secure/_stdio.h /usr/include/secure/_common.h --utils.o: /usr/include/math.h /usr/include/stdlib.h /usr/include/sys/wait.h --utils.o: /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h --utils.o: /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h --utils.o: /usr/include/machine/signal.h /usr/include/i386/signal.h --utils.o: /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h --utils.o: /usr/include/mach/i386/_structs.h --utils.o: /usr/include/sys/_pthread/_pthread_attr_t.h --utils.o: /usr/include/sys/_types/_sigaltstack.h --utils.o: /usr/include/sys/_types/_ucontext.h --utils.o: /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h --utils.o: /usr/include/sys/resource.h /usr/include/stdint.h --utils.o: /usr/include/sys/_types/_int8_t.h /usr/include/sys/_types/_int16_t.h --utils.o: /usr/include/sys/_types/_int32_t.h --utils.o: /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h --utils.o: /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h --utils.o: /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h --utils.o: /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h --utils.o: /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h --utils.o: /usr/include/machine/endian.h /usr/include/i386/endian.h --utils.o: /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h --utils.o: /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h --utils.o: /usr/include/sys/_types/_ct_rune_t.h --utils.o: /usr/include/sys/_types/_rune_t.h /usr/include/sys/_types/_wchar_t.h --utils.o: /usr/include/machine/types.h /usr/include/i386/types.h --utils.o: /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h --utils.o: /usr/include/string.h /usr/include/sys/_types/_rsize_t.h --utils.o: /usr/include/sys/_types/_errno_t.h /usr/include/strings.h --utils.o: /usr/include/secure/_string.h /usr/include/sys/time.h --utils.o: /usr/include/sys/_types/_fd_def.h --utils.o: /usr/include/sys/_types/_timespec.h --utils.o: /usr/include/sys/_types/_time_t.h --utils.o: /usr/include/sys/_types/_suseconds_t.h --utils.o: /usr/include/sys/_types/_fd_setsize.h --utils.o: /usr/include/sys/_types/_fd_set.h /usr/include/sys/_types/_fd_clr.h --utils.o: /usr/include/sys/_types/_fd_isset.h --utils.o: /usr/include/sys/_types/_fd_zero.h --utils.o: /usr/include/sys/_types/_fd_copy.h /usr/include/time.h --utils.o: /usr/include/sys/_types/_clock_t.h /usr/include/sys/_select.h --utils.o: linalg.h -+utils.o: /usr/include/sys/_null.h /usr/include/sys/_types.h -+utils.o: /usr/include/machine/_types.h /usr/include/math.h -+utils.o: /usr/include/machine/_limits.h /usr/include/stdlib.h -+utils.o: /usr/include/string.h /usr/include/strings.h /usr/include/sys/time.h -+utils.o: /usr/include/sys/_timeval.h /usr/include/sys/types.h -+utils.o: /usr/include/machine/endian.h /usr/include/sys/_pthreadtypes.h -+utils.o: /usr/include/sys/select.h /usr/include/sys/_sigset.h -+utils.o: /usr/include/sys/timespec.h /usr/include/time.h linalg.h - 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#include - - #include --#if defined(__APPLE__) || defined(__FreeBSD__) -+#if defined(__APPLE__) - #include -+#elif defined(__FreeBSD__) -+#include -+#include -+#include - #else - #include - #endif -@@ -4238,9 +4242,14 @@ int OSCopyFile(const char* source, const - } - *** 55 LINES SKIPPED ***