From nobody Sat Feb 26 15:04:13 2022 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id B084E19E0AC3; Sat, 26 Feb 2022 15:04:13 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4K5VKT4F0cz3FS9; Sat, 26 Feb 2022 15:04:13 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1645887853; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=IR6VJhLZTILrjcosWjITi6BgrsVXM5ZnmjZPlbBiVQU=; b=eVxUvDdLupCVqlsy+md18SUMdAnmwJNRJ+F6A9CTwoUDqRnpe2mcXfRPH97lmtRw64LFHt UUS6jbqk1/0OWL/v9OHI07dUKBMVHJQkKPPhfMm3hjP4rOL4DTAm56FMXJCCPvhJJobqeH wBT7ZP448rJb0IEjiiz6z6HaJ2JR21lyIzZeHlU+W+Oz2Pmf2LuphtLdqGLegSCs3mVq5B 31Gs3gSZhlbg6/2msttCMnMsjReBASf7zIGnM4nqI+UBe7/zT0E7VyOfpr9s2qX49rJIHL VKhDaqzUNOSH4IInFc11WxWhDb7t69eBsGyMLtCWe4mvcModSzZvcPj+jQDdag== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 6DEBA15DAE; Sat, 26 Feb 2022 15:04:13 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 21QF4Dqq070562; Sat, 26 Feb 2022 15:04:13 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 21QF4DAC070561; Sat, 26 Feb 2022 15:04:13 GMT (envelope-from git) Date: Sat, 26 Feb 2022 15:04:13 GMT Message-Id: <202202261504.21QF4DAC070561@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 822ec7476b36 - main - biology/samtools: Update to 1.15 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 822ec7476b36d4a004c88067044432fbc29ca9f4 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1645887853; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=IR6VJhLZTILrjcosWjITi6BgrsVXM5ZnmjZPlbBiVQU=; b=N7vDv54uWGprlCG+NK52pxSoYgBLQG5ob+HYx8wV+o4lPG972i4JuzVR5DXkGBZDKxOh6G Pn+8Do20TX7Rksa08WXKKNlLUdfEPov8+WF/asaLSgdVRLY8c6QFK2ZMAFLva6z31tkvO0 qOEUk7yAeA7ozKSSkVZY9Sz5gngr+uZHidj00n3S64zL0qJqYl2GnyS3+OqQ7YX/21q5gn Z5d3cuX3hqV96nbBg/V/YAKOKNafmjER5XcUhZj6Ah2UJivRPL/KAE+qIAd+mHD6BHEbDs eh39w9Our7QpLqA1v/XhLItMgmPtJO8g5j7oyfx+5CpfZL+ZdASI6Ymr0iZh7A== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1645887853; a=rsa-sha256; cv=none; b=DoP/LXiRpyZoS5/TXEO9J6G84iFkQ6nqcvUma0RPkjx7A62kKsDNUsrgUausXZ2aJZPgM1 yx5r6eM7IQ84b0mVaHYEdxBl2YK3xExV5+8+2EAFIS1TOT05H9Os6TKxq59Lrcgu11Yelc nUl+/KjXLrNFC/qg13Ds8yHoS2eaZ0K7YZ0n5fAkJXOhtnbz9VJp/rS/0UE0Lzp9UuzCdM yBpUcfWJJ6Sx9OJ+3luwl0W5etlegGaqVGafpk/nmc/XiN0RUe5aL5Og6iIatKjL40j8Bv T1Z59Q5NOlOs9eqJziJRHoIkUsGNxGDuZ/ozT+gk3aiK4MP1k9l+rPpMKHAzNg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=822ec7476b36d4a004c88067044432fbc29ca9f4 commit 822ec7476b36d4a004c88067044432fbc29ca9f4 Author: Jason W. Bacon AuthorDate: 2022-02-26 14:56:48 +0000 Commit: Jason W. Bacon CommitDate: 2022-02-26 15:04:10 +0000 biology/samtools: Update to 1.15 Several small enhancements and a few bug fixes Changes: https://github.com/samtools/samtools/releases Reported by: portscout --- biology/samtools/Makefile | 2 +- biology/samtools/distinfo | 6 +++--- biology/samtools/pkg-plist | 2 ++ 3 files changed, 6 insertions(+), 4 deletions(-) diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile index 59b08a5aab87..a0acc0e00d19 100644 --- a/biology/samtools/Makefile +++ b/biology/samtools/Makefile @@ -1,7 +1,7 @@ # Created by: Reed A. Cartwright PORTNAME= samtools -DISTVERSION= 1.14 +DISTVERSION= 1.15 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/samtools/distinfo b/biology/samtools/distinfo index eedab9c66fd4..19439fbc44f5 100644 --- a/biology/samtools/distinfo +++ b/biology/samtools/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1639702435 -SHA256 (samtools-samtools-1.14_GH0.tar.gz) = 055a19dfa0ebdc9a84ecbaa55f421854f2b87ec7616fb83add3cbf66aa13fc35 -SIZE (samtools-samtools-1.14_GH0.tar.gz) = 4933354 +TIMESTAMP = 1645831653 +SHA256 (samtools-samtools-1.15_GH0.tar.gz) = 5109a17f221b36291e4bc3ad68a00c28515d4f20a16b4e23806055661ca0df31 +SIZE (samtools-samtools-1.15_GH0.tar.gz) = 4970205 diff --git a/biology/samtools/pkg-plist b/biology/samtools/pkg-plist index e69a2e244fb7..aafc040158e0 100644 --- a/biology/samtools/pkg-plist +++ b/biology/samtools/pkg-plist @@ -27,6 +27,7 @@ man/man1/samtools-bedcov.1.gz man/man1/samtools-calmd.1.gz man/man1/samtools-cat.1.gz man/man1/samtools-collate.1.gz +man/man1/samtools-consensus.1.gz man/man1/samtools-coverage.1.gz man/man1/samtools-depad.1.gz man/man1/samtools-depth.1.gz @@ -38,6 +39,7 @@ man/man1/samtools-fixmate.1.gz man/man1/samtools-flags.1.gz man/man1/samtools-flagstat.1.gz man/man1/samtools-fqidx.1.gz +man/man1/samtools-head.1.gz man/man1/samtools-idxstats.1.gz man/man1/samtools-import.1.gz man/man1/samtools-index.1.gz