From nobody Tue Dec 13 00:50:08 2022 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4NWKf84FbNz4kGc7; Tue, 13 Dec 2022 00:50:08 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4NWKf83lhkz3QTM; Tue, 13 Dec 2022 00:50:08 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1670892608; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=Vsr96X9nwK+YqrPyIJoQlOv+RUYzHMD6PN/HhyGJbQE=; b=U+kcFa5X8o/O+Pe+uxCGJmadIPlv5r/kSqBd3qgQscS8JcxRnJoU9qpzoPHYLrQ+wnwd9k cDSQL9dMXtxAgiyMcGSsBAMjFCPmkc5zFeWKFTXPGqzCZJdLyVNTowF8ogYb2y3o1n1F8O LKDiEvQa7GvTifgqteAv31qDESEV9kqAStDsbMASXCct6We//0Ho/oKBuk65rvonIv6l6C 8uR/JQlqEndTsbrXcW/zC5MD345Y9P+JvMOCoavCCa3cf2EZGPqD4w7tu4D0kMVUypAi56 0u135hINv1We0jkzb1I4ps7hguzxg3rU4x2KhJ7mOKdFVA0SAKXeYqNnbAZz+A== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1670892608; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=Vsr96X9nwK+YqrPyIJoQlOv+RUYzHMD6PN/HhyGJbQE=; b=BEBXflKAeC/+OVxRzrrUqzl6s/C4GtAt9ic5/rXLtS1/slm7p2bjBHOoilVevv/EMA88aE U/to3ktfrMAQCW6L1yF8IGAIsJjXTPWdo6Gb5oahys51BRdPLNPE7PoAJ1Lxjle7fyFwBI cUhgtWJkA3BUiajZGpPf4cLhYVuhl9/xascnPmZar3gie47QeUGT2M0kfIAOjerTfgjgAE x3NAB25NnP9J7SrlvoOcfQevaC6DDhC47nZZqISrC+kJ+FXO0x0VarITInlPEp8kch+E5X mfujT4lK+q3+oQKGzXOU2SPG3a2tIqpi+8GzLLlZAB77NXCXOEeKFPe38HtGsA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1670892608; a=rsa-sha256; cv=none; b=x1Bh9SGuhoKtKoz0yq1//ic45wi9FZVb8vRSnvi+KM2Aln83NQnfpWPEosZE6ttA66BvRw CePIlXOOnqXJ00hH7rn2fb1inWUnWqCp70Lvgzhdp3FE3OobWtfmbopbVwt+Wy0ZeqY3x4 KrRK2uU83we4jTTK+A4VQQeY4ETLeSPqpQ4hhIiy1VXdYpsYnykOJMf98uwB+eLk2GF/cb Lk3H/+aaKpE6GtQsXrLaIioHfY3xgqARuCCHpgf97rUJNsdjDqO81kDl+Li5IEU/3pwsOF bKrTRATpMax8KWpPreXODhPYqHiZFySBV0NEq9SimqTTFCnFyqNn7pHPehNc/g== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4NWKf82jqPztjq; Tue, 13 Dec 2022 00:50:08 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 2BD0o8EB049820; Tue, 13 Dec 2022 00:50:08 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 2BD0o8pn049817; Tue, 13 Dec 2022 00:50:08 GMT (envelope-from git) Date: Tue, 13 Dec 2022 00:50:08 GMT Message-Id: <202212130050.2BD0o8pn049817@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: a06965636b73 - main - biology/biolibc-tools: Update to 0.1.4 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: a06965636b7360863524462378326b7145eaebb4 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=a06965636b7360863524462378326b7145eaebb4 commit a06965636b7360863524462378326b7145eaebb4 Author: Jason W. Bacon AuthorDate: 2022-12-13 00:47:59 +0000 Commit: Jason W. Bacon CommitDate: 2022-12-13 00:47:59 +0000 biology/biolibc-tools: Update to 0.1.4 Add deromanize subcommand to convert Roman numeral chromosome IDs fastx-stats: Report standard deviation for read length Changes: https://github.com/auerlab/biolibc-tools/releases --- biology/biolibc-tools/Makefile | 3 +-- biology/biolibc-tools/distinfo | 6 +++--- biology/biolibc-tools/pkg-plist | 2 ++ 3 files changed, 6 insertions(+), 5 deletions(-) diff --git a/biology/biolibc-tools/Makefile b/biology/biolibc-tools/Makefile index d61b832c18c2..93145af3ed79 100644 --- a/biology/biolibc-tools/Makefile +++ b/biology/biolibc-tools/Makefile @@ -1,6 +1,5 @@ PORTNAME= biolibc-tools -DISTVERSION= 0.1.3 -PORTREVISION= 1 +DISTVERSION= 0.1.4 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/biolibc-tools/distinfo b/biology/biolibc-tools/distinfo index c74c87b2dc3e..0b136ea2f5eb 100644 --- a/biology/biolibc-tools/distinfo +++ b/biology/biolibc-tools/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1654951264 -SHA256 (auerlab-biolibc-tools-0.1.3_GH0.tar.gz) = 0d5d983ea84e2aa8b23a4954b06f0f7b2eee033b570bf593d75a1196989b985e -SIZE (auerlab-biolibc-tools-0.1.3_GH0.tar.gz) = 27735 +TIMESTAMP = 1670785195 +SHA256 (auerlab-biolibc-tools-0.1.4_GH0.tar.gz) = aeecef87eecc3179cf033200b75be323737b46bc31ed6828d6524ce765bd8924 +SIZE (auerlab-biolibc-tools-0.1.4_GH0.tar.gz) = 28878 diff --git a/biology/biolibc-tools/pkg-plist b/biology/biolibc-tools/pkg-plist index f936b1acd1cf..4325c450f37b 100644 --- a/biology/biolibc-tools/pkg-plist +++ b/biology/biolibc-tools/pkg-plist @@ -1,5 +1,6 @@ bin/blt libexec/biolibc-tools/chrom-lens +libexec/biolibc-tools/deromanize libexec/biolibc-tools/ensemblid2gene libexec/biolibc-tools/extract-seq libexec/biolibc-tools/fasta2seq @@ -13,6 +14,7 @@ libexec/biolibc-tools/uniq-seqs.awk libexec/biolibc-tools/vcf-downsample libexec/biolibc-tools/vcf-search man/man1/blt-chrom-lens.1.gz +man/man1/blt-deromanize.1.gz man/man1/blt-ensemblid2gene.1.gz man/man1/blt-extract-seq.1.gz man/man1/blt-fasta2seq.1.gz