From nobody Sun Dec 11 20:12:19 2022 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4NVbX32pyYz4kKr6; Sun, 11 Dec 2022 20:12:19 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4NVbX32KF7z3wqS; Sun, 11 Dec 2022 20:12:19 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1670789539; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=i2BDWsQ0MBYBqY4BvrdejdUETR+cvUZCntc2CcpNONc=; b=o0v/MKgchM4Itjoh+F/RU7Ut6JVeFPqOZDFNm37UzIO6xomWCcwW4Q44ImbLtb5W9jkg1V UQLIYudtHG1JqZ5kvFGFx/pYNahY8VJH0nMQTVnyyogpWLS4+aVhSegLrBZImWngpSAFWz QJcrvvRnpyOyDtcX5YA6OIDc95ThWZXHHf6p84SlhAdCZ1YeLyBJTzRm/uqPFYq7xSMu8A StFJY2Ov/DhqtMn+ZDk9x4UMlyPQ4EzN30IoUwDY3ghEKgInJIvq/FcHGJnp+5YgksadG0 Bh2zwufIO+DKotVKJeIQfE0UJipmbJwJZnPbmjgNkQY/HaPsWHy+NDttFiMWnQ== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1670789539; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=i2BDWsQ0MBYBqY4BvrdejdUETR+cvUZCntc2CcpNONc=; b=xtJ1tuaELWkzKU6Vdt++HS19oXvdfXSa9DeixPgEJI8+XATWrakNTF/6z0z7Ci2BgC8/0R v3QWjra0MNYJ7RQiftCK1SjW6w9RWbfby7pkOZTKcPZfbGeON5r7NbA+b92GKjbjg00UHs +JeEHz4oIJoM8HwcEjOllqZr1wC6R3DHOb8IoiYq9E+dylyzk0z2MnLgGrym/EKJBSlAbx b4E3LryLfOYKRf9wOHJbEwdc91vOrTQd1k0gB4aQZqbndwlt5zAlmvHiwFyNt5siVII0wQ f3gbQ9Qsg75YEOZ67f7th4OBk13PUJleTZTCOSaTaONMVzxAE2skQyGm+OYl3A== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1670789539; a=rsa-sha256; cv=none; b=JWVDhhygEkuexbEyDT2PQAxVtK9f3p8BEI4Ay4e/cCtPPcSCYiCdmDmc0UOc8GnPpc90vD HGshGAvSVdnXFfVdpQ+p0WGmUvCz5yYFDdo0aNCoCjCxdCzUC9b+62ujStVSN5GLMBdzA9 hKeHCj7qnmdSGiOTUnKtcwV2+PFJjG6OnaRzeHLKBL7DGrUls0Y2S/rPutJ2VK35yxIYEa 70KIzP2txWQpSyzvQVJLgL1psWrTgls0hXb/Kz/wN3ptIVKnntOaYwTt/0yUiu9t6xRK9H r4hfQ0vG5c2UJx4SXLT95lMfbdeqQbmaQ0C4pCOem1Ocjz+tN+tJ4Dawep5RLg== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4NVbX31QdQz16wH; Sun, 11 Dec 2022 20:12:19 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 2BBKCJw2097985; Sun, 11 Dec 2022 20:12:19 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 2BBKCJnT097984; Sun, 11 Dec 2022 20:12:19 GMT (envelope-from git) Date: Sun, 11 Dec 2022 20:12:19 GMT Message-Id: <202212112012.2BBKCJnT097984@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 4b09e48aecc2 - main - biology/peak-classifier: Update to 0.1.4-5 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 4b09e48aecc23e12eb75330493000fa114cfab5d Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=4b09e48aecc23e12eb75330493000fa114cfab5d commit 4b09e48aecc23e12eb75330493000fa114cfab5d Author: Jason W. Bacon AuthorDate: 2022-12-11 20:09:20 +0000 Commit: Jason W. Bacon CommitDate: 2022-12-11 20:09:20 +0000 biology/peak-classifier: Update to 0.1.4-5 Update for biolibc API changes --- biology/peak-classifier/Makefile | 3 ++- biology/peak-classifier/distinfo | 6 +++--- biology/peak-classifier/pkg-descr | 1 - 3 files changed, 5 insertions(+), 5 deletions(-) diff --git a/biology/peak-classifier/Makefile b/biology/peak-classifier/Makefile index a5eafb536067..250d1ae4a221 100644 --- a/biology/peak-classifier/Makefile +++ b/biology/peak-classifier/Makefile @@ -1,5 +1,6 @@ PORTNAME= peak-classifier -DISTVERSION= 0.1.4 +DISTVERSION= 0.1.4-5 +DISTVERSIONSUFFIX= -ga5bcfec CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/peak-classifier/distinfo b/biology/peak-classifier/distinfo index 3e9d840de8a6..322ab908b10d 100644 --- a/biology/peak-classifier/distinfo +++ b/biology/peak-classifier/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1654953012 -SHA256 (auerlab-peak-classifier-0.1.4_GH0.tar.gz) = a2fa2a1f07953b4416e09dca3b8373c0f6ffba4ad6d79759ccb6a144a4685513 -SIZE (auerlab-peak-classifier-0.1.4_GH0.tar.gz) = 87333 +TIMESTAMP = 1667654366 +SHA256 (auerlab-peak-classifier-0.1.4-5-ga5bcfec_GH0.tar.gz) = 1a6cbfbdb42976ac7e9149cb3311af17b2216e899f3fa204fb85c17b6ccbb34a +SIZE (auerlab-peak-classifier-0.1.4-5-ga5bcfec_GH0.tar.gz) = 87371 diff --git a/biology/peak-classifier/pkg-descr b/biology/peak-classifier/pkg-descr index 9e50a43f343d..875a28de0c90 100644 --- a/biology/peak-classifier/pkg-descr +++ b/biology/peak-classifier/pkg-descr @@ -1,5 +1,4 @@ Classify ChIP/ATAC-Seq peaks based on features provided in a GFF - Peaks are provided in a BED file sorted by chromosome and position. The GFF must be sorted by chromosome and position, with gene-level features separated by ### tags and each gene organized into subfeatures such as transcripts and