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ESMTPS id 4NQgGm6d7Nzv9H; Mon, 5 Dec 2022 10:47:12 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 2B5AlC7w041430; Mon, 5 Dec 2022 10:47:12 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 2B5AlCTV041429; Mon, 5 Dec 2022 10:47:12 GMT (envelope-from git) Date: Mon, 5 Dec 2022 10:47:12 GMT Message-Id: <202212051047.2B5AlCTV041429@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: ae9fb317cb3f - main - math/scorec-core: New port: Parallel finite element unstructured meshes List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: ae9fb317cb3fd03f3db9c7d1d2688e79648dd553 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=ae9fb317cb3fd03f3db9c7d1d2688e79648dd553 commit ae9fb317cb3fd03f3db9c7d1d2688e79648dd553 Author: Yuri Victorovich AuthorDate: 2022-12-05 10:46:24 +0000 Commit: Yuri Victorovich CommitDate: 2022-12-05 10:47:10 +0000 math/scorec-core: New port: Parallel finite element unstructured meshes --- math/Makefile | 1 + math/scorec-core/Makefile | 49 +++++ math/scorec-core/distinfo | 5 + math/scorec-core/files/patch-pumi_pumi__sys.cc | 11 ++ math/scorec-core/pkg-descr | 20 ++ math/scorec-core/pkg-plist | 260 +++++++++++++++++++++++++ 6 files changed, 346 insertions(+) diff --git a/math/Makefile b/math/Makefile index 9808e93301c4..9d179022eabf 100644 --- a/math/Makefile +++ b/math/Makefile @@ -1083,6 +1083,7 @@ SUBDIR += scalapackfx SUBDIR += scilab SUBDIR += scilab-toolbox-swt + SUBDIR += scorec-core SUBDIR += scs SUBDIR += sdpa SUBDIR += secp256k1 diff --git a/math/scorec-core/Makefile b/math/scorec-core/Makefile new file mode 100644 index 000000000000..278db822f2bb --- /dev/null +++ b/math/scorec-core/Makefile @@ -0,0 +1,49 @@ +PORTNAME= scorec-core +DISTVERSIONPREFIX= v +DISTVERSION= 2.2.7-55 +DISTVERSIONSUFFIX= -g83113372 +CATEGORIES= math + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Parallel finite element unstructured meshes +WWW= https://github.com/SCOREC/core + +LICENSE= BSD3CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +LIB_DEPENDS= \ + libepoll-shim.so:devel/libepoll-shim \ + libfabric.so:net/libfabric \ + libhwloc.so:devel/hwloc2 \ + libjson-c.so:devel/json-c \ + libze_loader.so:devel/level-zero + +USES= cmake:testing compiler:c++11-lang pkgconfig +USE_LDCONFIG= yes + +USE_GITHUB= yes +GH_ACCOUNT= SCOREC +GH_PROJECT= core +GH_TUPLE= SCOREC:pumi-meshes:7b84de7:meshes/pumi-meshes + +CFLAGS+= ${MPI_CFLAGS} +CXXFLAGS+= ${MPI_CFLAGS} +LDFLAGS+= ${MPI_LIBS} + +CMAKE_ON= BUILD_SHARED_LIBS +CMAKE_TESTING_ON= IS_TESTING # some tests fail possibly because they need a larger MPI cluster + +OPTIONS_DEFINE= FORTRAN +OPTIONS_SINGLE= MPI +OPTIONS_SINGLE_MPI= MPICH OPENMPI +OPTIONS_DEFAULT= FORTRAN MPICH +OPTIONS_SUB= yes + +FORTRAN_USES= fortran +FORTRAN_CMAKE_BOOL= PUMI_FORTRAN_INTERFACE + +MPICH_USES= mpi:mpich + +OPENMPI_USES= mpi:openmpi + +.include diff --git a/math/scorec-core/distinfo b/math/scorec-core/distinfo new file mode 100644 index 000000000000..74d0e25e6a5f --- /dev/null +++ b/math/scorec-core/distinfo @@ -0,0 +1,5 @@ +TIMESTAMP = 1670233469 +SHA256 (SCOREC-core-v2.2.7-55-g83113372_GH0.tar.gz) = 0ee9c69b6dc3f0e8c38fca945112e3d81ec66f3a8e47a2474aafd695e55c3e33 +SIZE (SCOREC-core-v2.2.7-55-g83113372_GH0.tar.gz) = 1210395 +SHA256 (SCOREC-pumi-meshes-7b84de7_GH0.tar.gz) = 72f552318dac42aeebc6f1a2f4e7f7de4eaee69da7a32026d2b1e4081c28ed71 +SIZE (SCOREC-pumi-meshes-7b84de7_GH0.tar.gz) = 33991978 diff --git a/math/scorec-core/files/patch-pumi_pumi__sys.cc b/math/scorec-core/files/patch-pumi_pumi__sys.cc new file mode 100644 index 000000000000..2b732b80d0a1 --- /dev/null +++ b/math/scorec-core/files/patch-pumi_pumi__sys.cc @@ -0,0 +1,11 @@ +--- pumi/pumi_sys.cc.orig 2022-12-05 09:50:18 UTC ++++ pumi/pumi_sys.cc +@@ -98,6 +98,8 @@ double pumi_getMem() + task_info(current_task(), TASK_BASIC_INFO, (task_info_t)&t_info, &t_info_count); + size_t size = (resident ? t_info.resident_size : t_info.virtual_size); + return (double)size/M; ++#elif defined(__FreeBSD__) ++ return (double)20000.; // TODO default to 20GB for now + #elif defined(__bgq__) + size_t heap; + Kernel_GetMemorySize(KERNEL_MEMSIZE_HEAP, &heap); diff --git a/math/scorec-core/pkg-descr b/math/scorec-core/pkg-descr new file mode 100644 index 000000000000..5d65d20e15bd --- /dev/null +++ b/math/scorec-core/pkg-descr @@ -0,0 +1,20 @@ +The SCOREC Core is a set of C/C++ libraries for unstructured mesh simulations +on supercomputers. + +This project contains: +* PUMI: parallel unstructured mesh infrastructure API User's Guide +* PCU: Communication and file IO built on MPI +* APF: Abstract definition of meshes, fields, and related operations +* GMI: Common interface for geometric modeling kernels +* MDS: Compact but flexible array-based mesh data structure +* PARMA: Scalable partitioning and load balancing procedures +* SPR: Superconvergent Patch Recovery error estimator +* MA: Anisotropic mixed mesh adaptation and solution transfer +* SAM: Sizing anisotropic meshes +* STK: Conversion from APF meshes to Sandia's STK meshes +* ZOLTAN: Interface to run Sandia's Zoltan code on APF meshes +* PHASTA: Tools and file formats related to the PHASTA fluid solver +* MTH: Math containers and routines +* CRV: Support for curved meshes with Bezier Shapes +* PYCORE: Python Wrappers +* REE: Residual based implicit error estimator diff --git a/math/scorec-core/pkg-plist b/math/scorec-core/pkg-plist new file mode 100644 index 000000000000..db8a32f613bf --- /dev/null +++ b/math/scorec-core/pkg-plist @@ -0,0 +1,260 @@ +bin/adaptLvlSetLoop +bin/balance +bin/box +bin/chef +bin/chefReadUrPrep +bin/chefStream +bin/classifyThenAdapt +bin/collapse +bin/condense +bin/describe +bin/extrude +bin/fixDisconnected +bin/fixlayer +bin/fixshape +bin/from_ansys +bin/from_gmsh +bin/from_neper +bin/from_ugrid +bin/icesheet +bin/intrude +bin/measureAnisoStats +bin/measureIsoStats +bin/mkmodel +bin/mktopomodel +bin/modelInfo +bin/nektar_align +bin/print_pumipic_partition +bin/refine2x +bin/render +bin/renderClass +bin/render_ascii +bin/reorder +bin/repartition +bin/scale +bin/serialize +bin/split +bin/tetrahedronize +bin/threshold +bin/uniform +bin/verify +bin/visualizeAnisoSizes +bin/zsplit +include/GenIterator.h +include/GenTag.h +include/PCU.h +include/agm.h +include/apf.h +include/apf2mth.h +include/apfArray.h +include/apfBox.h +include/apfCavityOp.h +include/apfConvert.h +include/apfDynamicArray.h +include/apfDynamicMatrix.h +include/apfDynamicVector.h +include/apfField.h +include/apfFieldData.h +include/apfGeometry.h +include/apfMDS.h +include/apfMIS.h +include/apfMatrix.h +include/apfMesh.h +include/apfMesh2.h +include/apfMixedNumbering.h +include/apfNew.h +include/apfNumbering.h +include/apfNumberingClass.h +include/apfPartition.h +include/apfShape.h +include/apfVector.h +include/apfZoltan.h +include/canArray.h +include/canNewArray.h +include/chef.h +%%FORTRAN%%include/core_mesh_quality.mod +%%FORTRAN%%include/core_rigid_body.mod +%%FORTRAN%%include/core_snap.mod +include/crv.h +include/gmi.h +include/gmi_analytic.h +include/gmi_base.h +include/gmi_lookup.h 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