From nobody Thu Aug 11 18:34:30 2022 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4M3b7V4PCtz4Xx5f; Thu, 11 Aug 2022 18:34:30 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4M3b7V3s5nz4JdZ; Thu, 11 Aug 2022 18:34:30 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1660242870; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=lstmuFva3LcnftogREOW0ymwfET94De+6SzYMr75sJw=; b=CZe245nRmibkMFJFVhgTzecf5X7lbBRUe39q+iTc76dB5oHC2NUHejiIWjrg0POBfBgWkI Fr1lHr0Td1mWENMrdjV8h4JZTSZ1AZtzlJYEhNuUZZZgUlIgSswGBTZIGhqXavw3tmVIV2 aI4rzMOtBhP6+iuHAFAEssiOzRHLWaBRoAxGspIg3JGOKr1RI3H+9VTNlU5RBuHvaVpdTR WHjH45Z/v33SBNvy7PS6cSyGmFLYmgZSTniA3b8zirCvF2T9cvSYSEjMgPJIZyOfK8Z/on 0+fKtVAqL8eUVv2w2pFaAGJuy3+5G6YZpQljyvQFbOfo6c+JANsIUlbVTCLfSA== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4M3b7V2syjz11vP; Thu, 11 Aug 2022 18:34:30 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 27BIYU43032271; Thu, 11 Aug 2022 18:34:30 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 27BIYUTD032270; Thu, 11 Aug 2022 18:34:30 GMT (envelope-from git) Date: Thu, 11 Aug 2022 18:34:30 GMT Message-Id: <202208111834.27BIYUTD032270@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Dmitry Marakasov Subject: git: b28e6ccdb965 - main - biology/gatk: mark BROKEN List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: amdmi3 X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: b28e6ccdb9656ccd57de05d8dc299647a94b3646 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1660242870; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=lstmuFva3LcnftogREOW0ymwfET94De+6SzYMr75sJw=; b=kkT3O0e/uUkZat0agRaLK/DZivUiwk+ov+20vjbRPGiUJpS9njeYRq6prQ8N3fhDgNifAG fWpcfRgppXFJvjaMpXUbgIzRbES7t1X+dp0YjEq0+Eh2QdldfqgqGR63MQBw4aIwILSubo o0paMiDNpLaD68lfdfKEt4ht3bnVCtg3jCGiiptLmG817auZB8hIPT5CCPUpuSJRvFhbks aL6pYQ1oN2x4n2WUQIPuBUguwLzqEmXItztXWAyPtCrZynWuJLv7vThMvZqlQjKhEbjPqV NtUIMOt8uENiFAMPyvSzOZ2ouqRrC6BP4Abysrk0AJk1dqWJzmxA1/BgGImRZg== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1660242870; a=rsa-sha256; cv=none; b=ftzRXBK6IExDlCGTdFHE/trBHQyzNTCAdIawy+3Heic6Q0Ru7FIrbrq4GukGueto714gBb jkHzMZVguNvAINxldt88TdHUqneN47S5jxdeVEmVVOaf+bqlApnsSjuo/7vLF/U2+OrfSr FOEjueYs9fM6EbJRENJ+ZgtkXg9Yb82K/sbSZxwBkJZ1E6E9jPQME8U2CjFKvOtIgkga2Q vo/l40Wa7LYrCupwXAEambVQYneu8l667GQfEbV0vxssICIt3Jixisy6MVdMDwNjfzlzXH qk8N9L2D2NxP/z4duHp1tajaHr4TXCfhJCHooiFngsC6BtkPvdR0xSpJUy+DsA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by amdmi3: URL: https://cgit.FreeBSD.org/ports/commit/?id=b28e6ccdb9656ccd57de05d8dc299647a94b3646 commit b28e6ccdb9656ccd57de05d8dc299647a94b3646 Author: Dmitry Marakasov AuthorDate: 2022-08-11 18:27:58 +0000 Commit: Dmitry Marakasov CommitDate: 2022-08-11 18:33:41 +0000 biology/gatk: mark BROKEN FAILURE: Build failed with an exception. * Where: Build file '/wrkdirs/usr/ports/biology/gatk/work/gatk-4.2.6.1/build.gradle' line: 15 * What went wrong: Plugin [id: 'de.undercouch.download', version: '4.1.2'] was not found in any of the following sources: - Gradle Core Plugins (plugin is not in 'org.gradle' namespace) - Plugin Repositories (could not resolve plugin artifact 'de.undercouch.download:de.undercouch.download.gradle.plugin:4.1.2') Searched in the following repositories: Gradle Central Plugin Repository Reported by: pkg-fallout Approved by: portmgr blanket --- biology/gatk/Makefile | 1 + 1 file changed, 1 insertion(+) diff --git a/biology/gatk/Makefile b/biology/gatk/Makefile index 2aeee40d3c31..431ef692bf43 100644 --- a/biology/gatk/Makefile +++ b/biology/gatk/Makefile @@ -10,6 +10,7 @@ COMMENT= Variant discovery in high-throughput sequencing data LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.TXT +BROKEN= fails to build: Build failed with an exception BROKEN_FreeBSD_12_powerpc64= fails to build: String index out of range: -1 BUILD_DEPENDS= gradle:devel/gradle