git: 1aa4b199504f - main - biology/py-scikit-bio: Update 0.5.6 -> 0.5.7

The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=1aa4b199504fab66ea1575a27c7280b4b41ee6b4

commit 1aa4b199504fab66ea1575a27c7280b4b41ee6b4
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2022-04-15 17:08:59 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2022-04-15 19:09:57 +0000

    biology/py-scikit-bio: Update 0.5.6 -> 0.5.7
    
    Reported by:    portscout
---
 biology/py-scikit-bio/Makefile | 9 +++++----
 biology/py-scikit-bio/distinfo | 6 +++---
 2 files changed, 8 insertions(+), 7 deletions(-)

diff --git a/biology/py-scikit-bio/Makefile b/biology/py-scikit-bio/Makefile
index 5a4f0b01d3c7..0b446244e87f 100644
--- a/biology/py-scikit-bio/Makefile
+++ b/biology/py-scikit-bio/Makefile
@@ -1,5 +1,5 @@
 PORTNAME=	scikit-bio
-PORTVERSION=	0.5.6
+PORTVERSION=	0.5.7
 CATEGORIES=	biology education python
 MASTER_SITES=	CHEESESHOP
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
@@ -14,17 +14,18 @@ BUILD_DEPENDS=	${PYNUMPY}
 RUN_DEPENDS=	${PYNUMPY} \
 		${PYTHON_PKGNAMEPREFIX}CacheControl>=0.11.5:www/py-cachecontrol@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}decorator>=3.4.2:devel/py-decorator@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}hdmedians>=0.13:math/py-hdmedians@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}h5py>=2.9.0:science/py-h5py@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}hdmedians>=0.14.1:math/py-hdmedians@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}ipython>=3.2.0:devel/ipython@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}lockfile>=0.10.2:devel/py-lockfile@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}matplotlib>=1.4.3:math/py-matplotlib@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}natsort>=4.0.3:devel/py-natsort@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pandas>=1.0.0:math/py-pandas@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.19.1:science/py-scikit-learn@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR}
+		${PYTHON_PKGNAMEPREFIX}scipy>=1.3.0:science/py-scipy@${PY_FLAVOR}
 
 USES=		python:3.7+
-USE_PYTHON=	autoplist distutils
+USE_PYTHON=	distutils cython autoplist
 
 CONFLICTS_INSTALL=	${PYTHON_PKGNAMEPREFIX}ddtrace # lib/python3.8/site-packages/benchmarks/__init__.py
 
diff --git a/biology/py-scikit-bio/distinfo b/biology/py-scikit-bio/distinfo
index 2f100c10744b..9c48346f4bed 100644
--- a/biology/py-scikit-bio/distinfo
+++ b/biology/py-scikit-bio/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1589588901
-SHA256 (scikit-bio-0.5.6.tar.gz) = 48b73ec53ce0ff2c2e3e05f3cfcf93527c1525a8d3e9dd4ae317b4219c37f0ea
-SIZE (scikit-bio-0.5.6.tar.gz) = 8380439
+TIMESTAMP = 1649956313
+SHA256 (scikit-bio-0.5.7.tar.gz) = 6343ca0c621e2fcc5d1c042c8be3200664c5325956a83bea751cf1bcc75d1da9
+SIZE (scikit-bio-0.5.7.tar.gz) = 8731049