From nobody Wed Oct 13 13:06:37 2021 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id E755317F9630; Wed, 13 Oct 2021 13:06:37 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4HTt8Y6DCrz4nG5; Wed, 13 Oct 2021 13:06:37 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id B55AF2848D; Wed, 13 Oct 2021 13:06:37 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 19DD6biu064438; Wed, 13 Oct 2021 13:06:37 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 19DD6bl4064437; Wed, 13 Oct 2021 13:06:37 GMT (envelope-from git) Date: Wed, 13 Oct 2021 13:06:37 GMT Message-Id: <202110131306.19DD6bl4064437@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 904a889fd144 - main - biology/py-pybigwig: Python access to bigWig files using libBigWig List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 904a889fd144ce50db4d97a702861aea89fe2e94 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=904a889fd144ce50db4d97a702861aea89fe2e94 commit 904a889fd144ce50db4d97a702861aea89fe2e94 Author: Jason W. Bacon AuthorDate: 2021-10-13 13:03:21 +0000 Commit: Jason W. Bacon CommitDate: 2021-10-13 13:03:21 +0000 biology/py-pybigwig: Python access to bigWig files using libBigWig py-bigwig is a python extension, written in C, for quick access to bigBed files and access to and creation of bigWig files. This extension uses libBigWig for local and remote file access. --- biology/Makefile | 1 + biology/py-pybigwig/Makefile | 21 +++++++++++++++++++++ biology/py-pybigwig/distinfo | 3 +++ biology/py-pybigwig/pkg-descr | 5 +++++ 4 files changed, 30 insertions(+) diff --git a/biology/Makefile b/biology/Makefile index 3f2fb1f06f13..35521b0b5f27 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -160,6 +160,7 @@ SUBDIR += py-orange3-single-cell SUBDIR += py-pandas-charm SUBDIR += py-py2bit + SUBDIR += py-pybigwig SUBDIR += py-pyfaidx SUBDIR += py-pysam SUBDIR += py-python-libsbml diff --git a/biology/py-pybigwig/Makefile b/biology/py-pybigwig/Makefile new file mode 100644 index 000000000000..ab33b4650777 --- /dev/null +++ b/biology/py-pybigwig/Makefile @@ -0,0 +1,21 @@ +PORTNAME= pyBigWig +DISTVERSION= 0.3.18 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Python access to bigWig files using libBigWig + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE.txt + +LIB_DEPENDS= libcurl.so:ftp/curl + +USES= localbase python +USE_PYTHON= autoplist distutils + +post-install: + @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/pyBigWig.so + +.include diff --git a/biology/py-pybigwig/distinfo b/biology/py-pybigwig/distinfo new file mode 100644 index 000000000000..35e26a9f88d0 --- /dev/null +++ b/biology/py-pybigwig/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1617288519 +SHA256 (pyBigWig-0.3.18.tar.gz) = 4c2a8c571b4100ad7c4c318c142eb48558646be52aaab28215a70426f5be31bc +SIZE (pyBigWig-0.3.18.tar.gz) = 64834 diff --git a/biology/py-pybigwig/pkg-descr b/biology/py-pybigwig/pkg-descr new file mode 100644 index 000000000000..111f72f80af6 --- /dev/null +++ b/biology/py-pybigwig/pkg-descr @@ -0,0 +1,5 @@ +py-bigwig is a python extension, written in C, for quick access to +bigBed files and access to and creation of bigWig files. This extension +uses libBigWig for local and remote file access. + +WWW: https://github.com/deeptools/pyBigWig