From nobody Mon Dec 20 13:11:41 2021 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 323C618F3AA0; Mon, 20 Dec 2021 13:11:42 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4JHg316h17z4rdb; Mon, 20 Dec 2021 13:11:41 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id C484F16C4A; Mon, 20 Dec 2021 13:11:41 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 1BKDBfDb075754; Mon, 20 Dec 2021 13:11:41 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 1BKDBfMh075753; Mon, 20 Dec 2021 13:11:41 GMT (envelope-from git) Date: Mon, 20 Dec 2021 13:11:41 GMT Message-Id: <202112201311.1BKDBfMh075753@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: =?utf-8?Q?Fernando Apestegu=C3=ADa?= Subject: git: 88963ff54fdb - main - science/afni: update to 21.3.12 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: fernape X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 88963ff54fdbd8b44030bac7b86382f784ed2399 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1640005901; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=x7LK71mgdRedYj4NUNtEjgDOKx+muEscfT7GuopXdwg=; b=SCb2gpQGIvy/Qt4zk/QxoMCGocI+gKFnYXKcken3Q3c5XA598eccWf8P49IKB5n15RJknD CNOeUZZq8wvPsLvnBrDxMaJT9dlYn2lG5BukX3oExOu21BWz791Nlrl57BnuWDrYlTpxRN t4CwZ8TCnHG7mC8PxEgOu5gtF/ya5ZeqrlVo+4OsfL8NytV+xSyV0QWXIGFPQoGjRj9QgE v96hydxn40RYIwsgOz5RDhWiR6yVNVR9G/jjfJ1dsfwrjSoKfCk0DT9RO83kAdtUxLyume 6WbEJFC4kImXJ2rGOTxkPGuBmrpjexTY+50PPhb4pO4oy9RDGgbjDbEmjnMkRg== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1640005901; a=rsa-sha256; cv=none; b=C59ENUlJMWJXrYCSVbuLKPcvVGZN/cUPwyhLzuSLg1FynVt/ZGit4otID8/P7PlNKQJuJY Hw75AqzDN9Bi1giDayUr5nTCfbu9DrQD50tnnp3gj7ec6c58oH1WjCQdubjXNQPTeHV/Gl phssyyU2pDooTtvTh5v8wlEyUREY/2Klmr6K1vnV7Dl0RK0IDoauiGmI9u6U1deqvzk0ej BfaBcwnzog58rpluP5xWe8q1Vi/TbDMxftw9tbn5w1txMnEfZtqtSkdpbaittd3VBn1LvA R+cF2HDw8kl1l9kLHZ8YdN27U+WulfxKGYUEA3ruFIWhALo95lLUlBaf0u+EBw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by fernape: URL: https://cgit.FreeBSD.org/ports/commit/?id=88963ff54fdbd8b44030bac7b86382f784ed2399 commit 88963ff54fdbd8b44030bac7b86382f784ed2399 Author: Fernando Apesteguía AuthorDate: 2021-12-19 17:26:27 +0000 Commit: Fernando Apesteguía CommitDate: 2021-12-20 13:10:18 +0000 science/afni: update to 21.3.12 --- science/afni/Makefile | 2 +- science/afni/distinfo | 6 +++--- .../files/patch-crorden_dcm2niix__console_makefile | 24 +++++++++------------- science/afni/pkg-plist | 3 ++- 4 files changed, 16 insertions(+), 19 deletions(-) diff --git a/science/afni/Makefile b/science/afni/Makefile index 9f50ca94a6fb..034fbe633448 100644 --- a/science/afni/Makefile +++ b/science/afni/Makefile @@ -1,6 +1,6 @@ PORTNAME= afni DISTVERSIONPREFIX= AFNI_ -DISTVERSION= 21.3.10 +DISTVERSION= 21.3.12 CATEGORIES= science biology graphics perl5 python MAINTAINER= fernape@FreeBSD.org diff --git a/science/afni/distinfo b/science/afni/distinfo index 57e824db6bd6..372791ae2123 100644 --- a/science/afni/distinfo +++ b/science/afni/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1638970395 -SHA256 (afni-afni-AFNI_21.3.10_GH0.tar.gz) = 1efe11a0a232e6b1c58f77f1323e73abd0af41d727fa279fbab4b13fd204b98c -SIZE (afni-afni-AFNI_21.3.10_GH0.tar.gz) = 43847925 +TIMESTAMP = 1639850671 +SHA256 (afni-afni-AFNI_21.3.12_GH0.tar.gz) = a30d5d5f5f0e004f5e724159e886e3a261674084d3d694fc3677bd5eeafcb9b3 +SIZE (afni-afni-AFNI_21.3.12_GH0.tar.gz) = 43864911 diff --git a/science/afni/files/patch-crorden_dcm2niix__console_makefile b/science/afni/files/patch-crorden_dcm2niix__console_makefile index 5c34e38e062f..3fbb4ece924e 100644 --- a/science/afni/files/patch-crorden_dcm2niix__console_makefile +++ b/science/afni/files/patch-crorden_dcm2niix__console_makefile @@ -1,26 +1,22 @@ ---- crorden/dcm2niix_console/makefile.orig 2021-11-08 00:47:00 UTC +--- crorden/dcm2niix_console/makefile.orig 2021-12-19 17:24:45 UTC +++ crorden/dcm2niix_console/makefile -@@ -1,8 +1,8 @@ +@@ -1,5 +1,5 @@ # Regular use -CFLAGS=-s -O3 -+CXXFLAGS?=-s -O3 ++CXXFLAGS=-s -O3 # Debugging --#CFLAGS=-g -+#CXXFLAGS=-g - - #Leak tests: - # https://clang.llvm.org/docs/AddressSanitizer.html -@@ -21,7 +21,7 @@ ifneq ($(OS),Windows_NT) - ifeq "$(OS)" "Darwin" + #CFLAGS=-g +@@ -22,7 +22,7 @@ ifneq ($(OS),Windows_NT) #CFLAGS=-dead_strip -O3 - #CFLAGS= -O3 -- CFLAGS=-O3 -sectcreate __TEXT __info_plist Info.plist -+ CXXFLAGS=-O3 -sectcreate __TEXT __info_plist Info.plist + # ponder -sectcreate later [rickr] + # CFLAGS=-O3 -sectcreate __TEXT __info_plist Info.plist +- CFLAGS= -O3 ++ CXXFLAGS= -O3 #Apple notarization requires a Info.plist # For .app bundles, the Info.plist is a separate file, for executables it is appended as a section #you can check that the Info.plist section has been inserted with either of these commands -@@ -31,4 +31,4 @@ ifneq ($(OS),Windows_NT) +@@ -32,4 +32,4 @@ ifneq ($(OS),Windows_NT) endif endif all: diff --git a/science/afni/pkg-plist b/science/afni/pkg-plist index 0fe645395137..3f338117d268 100644 --- a/science/afni/pkg-plist +++ b/science/afni/pkg-plist @@ -232,6 +232,7 @@ bin/3ddelay bin/3ddot bin/3ddot_beta bin/3dedge3 +bin/3dedgedog bin/3dfim+ bin/3dfractionize bin/3dhistog @@ -680,7 +681,7 @@ include/afni/rcmat.h include/afni/tagset.h include/afni/thd_atlas.h include/afni/thd_compress.h -include/afni/thd_depth.h +include/afni/thd_edge_dog.h include/afni/thd_euler_dist.h include/afni/thd_iochan.h include/afni/thd_maker.h