git: 0651e2054aa6 - main - biology/gatk: Update tests stats; Add dependency

The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=0651e2054aa68513a8c174a4b7f7ec5606557ce9

commit 0651e2054aa68513a8c174a4b7f7ec5606557ce9
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2024-10-31 19:27:12 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2024-10-31 19:28:13 +0000

    biology/gatk: Update tests stats; Add dependency
---
 biology/gatk/Makefile | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/biology/gatk/Makefile b/biology/gatk/Makefile
index f442f7798f45..675650e5ac59 100644
--- a/biology/gatk/Makefile
+++ b/biology/gatk/Makefile
@@ -1,5 +1,6 @@
 PORTNAME=	gatk
 DISTVERSION=	4.6.1.0
+PORTREVISION=	1
 CATEGORIES=	biology java
 EXTRACT_ONLY=	${DISTNAME}${EXTRACT_SUFX}
 
@@ -12,7 +13,8 @@ LICENSE_FILE=	${WRKSRC}/LICENSE.TXT
 
 BUILD_DEPENDS=	gradle:devel/gradle
 RUN_DEPENDS=	${LOCALBASE}/lib/libfml.so:biology/fermi-lite \
-		gkl>0:biology/gkl
+		gkl>0:biology/gkl \
+		mummer>0:biology/mummer
 
 USES=		gettext-runtime python:test
 USE_JAVA=	yes
@@ -116,7 +118,7 @@ do-test: # tests require WITH_LARGE_FILES=ON, and they use a lot of disk space
 	@cd ${WRKSRC} && \
 		${SETENV} ${TEST_ENV} gradle -DLIBBWA_PATH=${PREFIX}/lib/libfml.so test
 
-# tests results as of version 4.6.0.0_1: 288433 tests completed, 301 failed, 37 skipped, see https://github.com/broadinstitute/gatk/issues/8940
+# tests results as of version 4.6.1.0: 288552 tests, 301 failures, 37 ignored, 1h55m5.63s duration, 99% successful, see https://github.com/broadinstitute/gatk/issues/8940
 # see https://github.com/broadinstitute/gatk/issues/8939: Tests fail to find libgkl libraries in /usr/local/lib
 
 .include <bsd.port.mk>