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Tue, 12 Nov 2024 08:32:54 GMT (envelope-from git) Date: Tue, 12 Nov 2024 08:32:54 GMT Message-Id: <202411120832.4AC8WsJV051637@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 7adb8c360bf5 - main - biology/py-pyrodigal: update 3.5.2 =?utf-8?Q?=E2=86=92?= 3.6.3 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-all@freebsd.org Sender: owner-dev-commits-ports-all@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 7adb8c360bf587e65ba496fd9b7fc249ec795b10 Auto-Submitted: auto-generated The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=7adb8c360bf587e65ba496fd9b7fc249ec795b10 commit 7adb8c360bf587e65ba496fd9b7fc249ec795b10 Author: Yuri Victorovich AuthorDate: 2024-11-12 08:25:53 +0000 Commit: Yuri Victorovich CommitDate: 2024-11-12 08:32:35 +0000 biology/py-pyrodigal: update 3.5.2 → 3.6.3 --- biology/py-pyrodigal/Makefile | 16 +++++++++------- biology/py-pyrodigal/distinfo | 6 +++--- 2 files changed, 12 insertions(+), 10 deletions(-) diff --git a/biology/py-pyrodigal/Makefile b/biology/py-pyrodigal/Makefile index dce43d4c39ef..490813e388a2 100644 --- a/biology/py-pyrodigal/Makefile +++ b/biology/py-pyrodigal/Makefile @@ -1,31 +1,33 @@ PORTNAME= pyrodigal -DISTVERSION= 3.5.2 +DISTVERSION= 3.6.3 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Python binding for Prodigal, an ORF finder for genomes and metagenomes -WWW= https://github.com/althonos/pyrodigal/ +WWW= https://pyrodigal.readthedocs.io/en/stable/ \ + https://github.com/althonos/pyrodigal/ LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING -BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cython3>0:lang/cython3@${PY_FLAVOR} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cython3>0:lang/cython3@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scikit-build-core>0:devel/py-scikit-build-core@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}archspec>0:devel/py-archspec@${PY_FLAVOR} -USES= python -USE_PYTHON= distutils concurrent autoplist pytest # cython: cython3 isn't yet supported by python.mk +USES= cmake:indirect python +USE_PYTHON= pep517 concurrent autoplist pytest # cython: cython3 isn't yet supported by python.mk TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} -post-build: +xpost-build: @cd ${BUILD_WRKSRC} && ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} setup.py build_ext --inplace post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pyrodigal/lib${PYTHON_EXT_SUFFIX}.so -do-test: +do-test: # as of 3.6.3 this doesn't work: https://github.com/althonos/pyrodigal/issues/63 @cd ${TEST_WRKSRC} && ${SETENV} ${TEST_ENV} ${PYTHON_CMD} -m unittest discover -vv .include diff --git a/biology/py-pyrodigal/distinfo b/biology/py-pyrodigal/distinfo index 26a6af630d7d..19c6cf076683 100644 --- a/biology/py-pyrodigal/distinfo +++ b/biology/py-pyrodigal/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1725511908 -SHA256 (pyrodigal-3.5.2.tar.gz) = 2a40eb6113e720ada51c326958b295944cdc33ecee9f25d5bad4e9a8e6e6f7f5 -SIZE (pyrodigal-3.5.2.tar.gz) = 1857311 +TIMESTAMP = 1731398873 +SHA256 (pyrodigal-3.6.3.tar.gz) = 3e226f743c960d4d30c46ae6868aff7e2a6b98f8d837cfbd2637568569b21f78 +SIZE (pyrodigal-3.6.3.tar.gz) = 3589356