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Fri, 1 Nov 2024 19:29:32 GMT (envelope-from git) Date: Fri, 1 Nov 2024 19:29:32 GMT Message-Id: <202411011929.4A1JTWC8040749@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 537eccbc55d0 - main - biology/gatk: Update TEST_ENV List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-all@freebsd.org Sender: owner-dev-commits-ports-all@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 537eccbc55d08d5d3bb49806c1e798ccbccc5c61 Auto-Submitted: auto-generated The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=537eccbc55d08d5d3bb49806c1e798ccbccc5c61 commit 537eccbc55d08d5d3bb49806c1e798ccbccc5c61 Author: Yuri Victorovich AuthorDate: 2024-11-01 19:00:19 +0000 Commit: Yuri Victorovich CommitDate: 2024-11-01 19:29:28 +0000 biology/gatk: Update TEST_ENV --- biology/gatk/Makefile | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/biology/gatk/Makefile b/biology/gatk/Makefile index 675650e5ac59..512cb3b71723 100644 --- a/biology/gatk/Makefile +++ b/biology/gatk/Makefile @@ -31,7 +31,9 @@ NO_ARCH= yes DEPS_CACHE_DIR= ${WRKDIR} -TEST_ENV= ${MAKE_ENV} JAVA_TOOL_OPTIONS="-DLIBBWA_PATH=${PREFIX}/lib/libfml.so" +TEST_ENV= ${MAKE_ENV} \ + JAVA_TOOL_OPTIONS="-DLIBBWA_PATH=${PREFIX}/lib/libfml.so" \ + GATK_LOCAL_JAR=${STAGEDIR}${JAVAJARDIR}/GenomeAnalysisTK-${PORTVERSION}.jar PLIST_FILES= bin/${PORTNAME} \ ${JAVAJARDIR}/GenomeAnalysisTK-${PORTVERSION}.jar