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Sat, 27 May 2023 04:30:46 GMT (envelope-from git) Date: Sat, 27 May 2023 04:30:46 GMT Message-Id: <202305270430.34R4UkOS037982@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Po-Chuan Hsieh Subject: git: 64e4fe193ce5 - main - biology/libsedml: Fix build with libsbml 5.20.0 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: sunpoet X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 64e4fe193ce5a65a0369fc14c94d2d00aa51d32c Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by sunpoet: URL: https://cgit.FreeBSD.org/ports/commit/?id=64e4fe193ce5a65a0369fc14c94d2d00aa51d32c commit 64e4fe193ce5a65a0369fc14c94d2d00aa51d32c Author: Po-Chuan Hsieh AuthorDate: 2023-05-27 04:13:57 +0000 Commit: Po-Chuan Hsieh CommitDate: 2023-05-27 04:24:05 +0000 biology/libsedml: Fix build with libsbml 5.20.0 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/libsedml/work/.build -- The CXX compiler identification is Clang 13.0.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for BZ2_bzCompressInit in /usr/lib/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib/libbz2.so - found -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) CMake Error at /usr/local/share/cmake/Modules/Internal/CheckSourceCompiles.cmake:51 (message): check_source_compiles: C: needs to be enabled before use. Call Stack (most recent call first): /usr/local/share/cmake/Modules/CheckCSourceCompiles.cmake:76 (cmake_check_source_compiles) CMakeModules/FindLIBXML.cmake:115 (CHECK_C_SOURCE_COMPILES) /usr/local/share/cmake/Modules/CMakeFindDependencyMacro.cmake:76 (find_package) /usr/local/lib/cmake/sbml-static-config.cmake:14 (find_dependency) /usr/local/share/cmake/Modules/FindLIBSBML.cmake:42 (find_package) CMakeLists.txt:338 (find_package) -- LIBXML_LIBXML_TEST = CMake Error at /usr/local/share/cmake/Modules/Internal/CheckSourceCompiles.cmake:51 (message): check_source_compiles: C: needs to be enabled before use. Call Stack (most recent call first): /usr/local/share/cmake/Modules/CheckCSourceCompiles.cmake:76 (cmake_check_source_compiles) CMakeModules/FindLIBXML.cmake:125 (CHECK_C_SOURCE_COMPILES) /usr/local/share/cmake/Modules/CMakeFindDependencyMacro.cmake:76 (find_package) /usr/local/lib/cmake/sbml-static-config.cmake:14 (find_dependency) /usr/local/share/cmake/Modules/FindLIBSBML.cmake:42 (find_package) CMakeLists.txt:338 (find_package) -- LIBXML_LIBXML_TEST2 = CMake Error at CMakeModules/FindLIBXML.cmake:132 (message): Unable to compile a test executable against LIBXML LIBXML_INCLUDE_DIR = /usr/local/include/libxml2 LIBXML_LIBRARY = /usr/local/lib/libxml2.so Call Stack (most recent call first): /usr/local/share/cmake/Modules/CMakeFindDependencyMacro.cmake:76 (find_package) /usr/local/lib/cmake/sbml-static-config.cmake:14 (find_dependency) /usr/local/share/cmake/Modules/FindLIBSBML.cmake:42 (find_package) CMakeLists.txt:338 (find_package) -- Configuring incomplete, errors occurred! *** Error code 1 Stop. --- biology/libsedml/files/patch-CMakeLists.txt | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/biology/libsedml/files/patch-CMakeLists.txt b/biology/libsedml/files/patch-CMakeLists.txt new file mode 100644 index 000000000000..d3511e327290 --- /dev/null +++ b/biology/libsedml/files/patch-CMakeLists.txt @@ -0,0 +1,11 @@ +--- CMakeLists.txt.orig 2022-06-07 11:34:09 UTC ++++ CMakeLists.txt +@@ -73,7 +73,7 @@ set(LIBSEDML_DOTTED_VERSION ${LIBSEDML_VERSION}) + set(PACKAGE_NAME "libSEDML") + + project (libsedml VERSION "${LIBSEDML_VERSION_MAJOR}.${LIBSEDML_VERSION_MINOR}.${LIBSEDML_VERSION_PATCH}" +- LANGUAGES CXX) ++ LANGUAGES C CXX) + + set(CMAKE_CXX_STANDARD 11) + set(CMAKE_CXX_STANDARD_REQUIRED YES)