git: 06944a377518 - main - science/libcifpp: Update 5.0.3-1 → 5.0.9

The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=06944a377518b83514e3670426833713f3c11708

commit 06944a377518b83514e3670426833713f3c11708
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2023-06-03 06:22:08 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2023-06-03 07:01:39 +0000

    science/libcifpp: Update 5.0.3-1 → 5.0.9
    
    Reported by:    portscout
---
 science/libcifpp/Makefile                   |  6 +++---
 science/libcifpp/distinfo                   | 10 +++++-----
 science/libcifpp/files/patch-CMakeLists.txt | 13 +++++++++++--
 science/libcifpp/pkg-plist                  |  5 +++--
 4 files changed, 22 insertions(+), 12 deletions(-)

diff --git a/science/libcifpp/Makefile b/science/libcifpp/Makefile
index 7fdfe6785805..1928040685c6 100644
--- a/science/libcifpp/Makefile
+++ b/science/libcifpp/Makefile
@@ -1,7 +1,6 @@
 PORTNAME=	libcifpp
 DISTVERSIONPREFIX=	v
-DISTVERSION=	5.0.3-1
-DISTVERSIONSUFFIX=	-gdffbf52
+DISTVERSION=	5.0.9
 CATEGORIES=	science
 MASTER_SITES=	ftp://ftp.wwpdb.org/pub/pdb/data/monomers/:components
 DISTFILES=	components.cif.gz:components
@@ -18,7 +17,7 @@ LICENSE_FILE=	${WRKSRC}/LICENSE
 LIB_DEPENDS=	libboost_iostreams.so:devel/boost-libs
 RUN_DEPENDS=	bash:shells/bash
 
-USES=		cmake:testing compiler:c++20-lang shebangfix
+USES=		cmake:testing compiler:c++20-lang eigen:3 shebangfix
 USE_LDCONFIG=	yes
 
 USE_GITHUB=	yes
@@ -33,5 +32,6 @@ CMAKE_TESTING_ON=	ENABLE_TESTING
 post-install:
 	@cd ${STAGEDIR}${PREFIX} && \
 		${RM} -r var etc/libcifpp etc/periodic
+	@${RM} -r ${STAGEDIR}/var/cache/libcifpp
 
 .include <bsd.port.mk>
diff --git a/science/libcifpp/distinfo b/science/libcifpp/distinfo
index 51c4d404078c..08c8532cd033 100644
--- a/science/libcifpp/distinfo
+++ b/science/libcifpp/distinfo
@@ -1,5 +1,5 @@
-TIMESTAMP = 1668930323
-SHA256 (libcifpp-5.0.3.1/components.cif.gz) = a799727c161086886846e8bb36b91b5d05989969a5299b71da0febf6edf338ab
-SIZE (libcifpp-5.0.3.1/components.cif.gz) = 88345745
-SHA256 (libcifpp-5.0.3.1/PDB-REDO-libcifpp-v5.0.3-1-gdffbf52_GH0.tar.gz) = f7283e3364f073e48098944749d1021f99da12538b43ad47af330d882f501bff
-SIZE (libcifpp-5.0.3.1/PDB-REDO-libcifpp-v5.0.3-1-gdffbf52_GH0.tar.gz) = 1868095
+TIMESTAMP = 1685771829
+SHA256 (libcifpp-5.0.9/components.cif.gz) = 9b80eb00bfd9701c574d9773e59fda9dfa8310b3c6d9a43ff205f431abe5f076
+SIZE (libcifpp-5.0.9/components.cif.gz) = 91711088
+SHA256 (libcifpp-5.0.9/PDB-REDO-libcifpp-v5.0.9_GH0.tar.gz) = 9c6734a5f1332153e8f2bcfdcdd3c1b0e067ce859079c474ab0ef5a629ae9121
+SIZE (libcifpp-5.0.9/PDB-REDO-libcifpp-v5.0.9_GH0.tar.gz) = 2240381
diff --git a/science/libcifpp/files/patch-CMakeLists.txt b/science/libcifpp/files/patch-CMakeLists.txt
index 1ba47658f564..4d9aa0eb46cd 100644
--- a/science/libcifpp/files/patch-CMakeLists.txt
+++ b/science/libcifpp/files/patch-CMakeLists.txt
@@ -1,6 +1,6 @@
---- CMakeLists.txt.orig	2022-11-13 18:41:37 UTC
+--- CMakeLists.txt.orig	2023-05-31 13:17:00 UTC
 +++ CMakeLists.txt
-@@ -285,7 +285,7 @@ if(CIFPP_DOWNLOAD_CCD)
+@@ -310,7 +310,7 @@ if(CIFPP_DOWNLOAD_CCD)
  		find_program(GUNZIP gunzip)
  
  		if(GUNZIP)
@@ -9,3 +9,12 @@
  				SHOW_PROGRESS)
  			add_custom_command(OUTPUT ${COMPONENTS_CIF}
  				COMMAND ${GUNZIP} ${COMPONENTS_CIF}.gz
+@@ -478,7 +478,7 @@ if(CIFPP_INSTALL_UPDATE_SCRIPT)
+ 	install(DIRECTORY DESTINATION "${CIFPP_ETC_DIR}/libcifpp/cache-update.d")
+ 
+ 	# a config to, to make it complete
+-	if(NOT EXISTS "${CIFPP_ETC_DIR}/libcifpp.conf")
++	if(TRUE OR NOT EXISTS "${CIFPP_ETC_DIR}/libcifpp.conf")
+ 		file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/libcifpp.conf [[# Uncomment the next line to enable automatic updates
+ # update=true
+ ]])
diff --git a/science/libcifpp/pkg-plist b/science/libcifpp/pkg-plist
index 9850c6681a72..30db3b4b5fbd 100644
--- a/science/libcifpp/pkg-plist
+++ b/science/libcifpp/pkg-plist
@@ -6,13 +6,14 @@ include/cif++/compound.hpp
 include/cif++/condition.hpp
 include/cif++/datablock.hpp
 include/cif++/dictionary_parser.hpp
+include/cif++/exports.hpp
 include/cif++/file.hpp
 include/cif++/format.hpp
 include/cif++/forward_decl.hpp
 include/cif++/gzio.hpp
 include/cif++/item.hpp
 include/cif++/iterator.hpp
-include/cif++/list.hpp
+include/cif++/matrix.hpp
 include/cif++/model.hpp
 include/cif++/parser.hpp
 include/cif++/pdb/cif2pdb.hpp
@@ -32,7 +33,7 @@ lib/cmake/cifpp/cifppTargets-%%CMAKE_BUILD_TYPE%%.cmake
 lib/cmake/cifpp/cifppTargets.cmake
 lib/libcifpp.so
 lib/libcifpp.so.5
-lib/libcifpp.so.5.0.5
+lib/libcifpp.so.5.0.9
 libdata/pkgconfig/libcifpp.pc
 %%DATADIR%%/components.cif
 %%DATADIR%%/mmcif_ddl.dic